RNA–Protein interactions for RNA: ENST00000594948.5

VRK3-209, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 2 BASIC

Gene VRK3, Length 1,847 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-209ENST00000594948 S100A11P31949 105 aa12.12□□□□□ -0.47
VRK3-209ENST00000594948 GJA4P35212 333 aa12.12□□□□□ -0.47
VRK3-209ENST00000594948 NUP62P37198 522 aaPredicted RBP12.12□□□□□ -0.47
VRK3-209ENST00000594948 PSMB10P40306 273 aa12.12□□□□□ -0.47
VRK3-209ENST00000594948 SEC61A1P61619 476 aaKnown RBP12.12□□□□□ -0.47
VRK3-209ENST00000594948 RPS4XP62701 263 aaKnown RBP12.12□□□□□ -0.47
VRK3-209ENST00000594948 ID2Q02363 134 aa12.12□□□□□ -0.47
VRK3-209ENST00000594948 EXOSC7Q15024 291 aaKnown RBP12.12□□□□□ -0.47
VRK3-209ENST00000594948 MPPED2Q15777 294 aa12.12□□□□□ -0.47
VRK3-209ENST00000594948 Q499Y3 187 aa12.12□□□□□ -0.47
VRK3-209ENST00000594948 PXDC1Q5TGL8 231 aa12.12□□□□□ -0.47
VRK3-209ENST00000594948 KANSL1Q7Z3B3 1105 aa12.12□□□□□ -0.47
VRK3-209ENST00000594948 ZAR1Q86SH2 424 aa12.12□□□□□ -0.47
VRK3-209ENST00000594948 DND1Q8IYX4 353 aaKnown RBP12.12□□□□□ -0.47
VRK3-209ENST00000594948 RNF166Q96A37 237 aaPredicted RBP12.12□□□□□ -0.47
VRK3-209ENST00000594948 TRIM43Q96BQ3 446 aaPredicted RBP12.12□□□□□ -0.47
VRK3-209ENST00000594948 AIFM2Q9BRQ8 373 aa12.12□□□□□ -0.47
VRK3-209ENST00000594948 SLC25A18Q9H1K4 315 aa12.12□□□□□ -0.47
VRK3-209ENST00000594948 FGF22Q9HCT0 170 aa12.12□□□□□ -0.47
VRK3-209ENST00000594948 ZDHHC4Q9NPG8 344 aa12.12□□□□□ -0.47
VRK3-209ENST00000594948 CA10Q9NS85 328 aa12.12□□□□□ -0.47
VRK3-209ENST00000594948 TMEM74BQ9NUR3 256 aa12.12□□□□□ -0.47
VRK3-209ENST00000594948 ACTR10Q9NZ32 417 aa12.12□□□□□ -0.47
VRK3-209ENST00000594948 KLK11Q9UBX7 282 aa12.12□□□□□ -0.47
VRK3-209ENST00000594948 SLC6A5Q9Y345 797 aa12.12□□□□□ -0.47
VRK3-209ENST00000594948 RWDD3Q9Y3V2 267 aa12.12□□□□□ -0.47
VRK3-209ENST00000594948 A0A087WUJ7 227 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 TBC1D3IA0A087WXS9 549 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 UBE2QL1A1L167 161 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 HSPB2A8KAH6 182 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 A8MXK9 166 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 NPIPB9F8W1W9 429 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 NARSO43776 548 aaKnown RBP12.11□□□□□ -0.47
VRK3-209ENST00000594948 SELENOFO60613 162 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 RP2O75695 350 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 SERPINI2O75830 405 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 AQP8O94778 261 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 ZFPL1O95159 310 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 CBX7O95931 251 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 EGFP01133 1207 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 HRGP04196 525 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 SLC35E2P0CK97 266 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 APEHP13798 732 aaKnown RBP12.11□□□□□ -0.47
VRK3-209ENST00000594948 CDK2P24941 298 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 AK4P27144 223 aaPredicted RBP12.11□□□□□ -0.47
VRK3-209ENST00000594948 PRPS1P60891 318 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 CBFBQ13951 182 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 HLXQ14774 488 aaPredicted RBP12.11□□□□□ -0.47
VRK3-209ENST00000594948 HSPB2Q16082 182 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 LINC01590Q5TEZ4 76 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 FAM122CQ6P4D5 195 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 KIRREL2Q6UWL6 708 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 STAC2Q6ZMT1 411 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 SLC16A9Q7RTY1 509 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 SLC36A1Q7Z2H8 476 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 FAM220AQ7Z4H9 259 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 ZNF595Q8IYB9 648 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 CA13Q8N1Q1 262 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 EIF4E3Q8N5X7 224 aaKnown RBP12.11□□□□□ -0.47
VRK3-209ENST00000594948 ZNF433Q8N7K0 673 aaPredicted RBP12.11□□□□□ -0.47
VRK3-209ENST00000594948 PCNPQ8WW12 178 aaKnown RBP12.11□□□□□ -0.47
VRK3-209ENST00000594948 KLHL15Q96M94 604 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 ZFYVE21Q9BQ24 234 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 SHARPINQ9H0F6 387 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 TCF7L1Q9HCS4 588 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 PFDN2Q9UHV9 154 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 PCDHGA5Q9Y5G8 931 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 OR6C68A6NDL8 312 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 IMPA2O14732 288 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 ADAM11O75078 769 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 NMBP08949 121 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 RPL4P36578 427 aaKnown RBP12.11□□□□□ -0.47
VRK3-209ENST00000594948 RAB38P57729 211 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 NANOS3P60323 173 aaKnown RBP12.11□□□□□ -0.47
VRK3-209ENST00000594948 ALKBH1Q13686 389 aaKnown RBP12.11□□□□□ -0.47
VRK3-209ENST00000594948 RUNX3Q13761 415 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 RBMS2Q15434 407 aaKnown RBP12.11□□□□□ -0.47
VRK3-209ENST00000594948 ZNHIT3Q15649 155 aaPredicted RBP12.11□□□□□ -0.47
VRK3-209ENST00000594948 OR5M10Q6IEU7 315 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 PSRC1Q6PGN9 363 aaPredicted RBP12.11□□□□□ -0.47
VRK3-209ENST00000594948 HSD17B13Q7Z5P4 300 aaPredicted RBP12.11□□□□□ -0.47
VRK3-209ENST00000594948 LRRTM1Q86UE6 522 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 CACUL1Q86Y37 369 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 GLB1L2Q8IW92 636 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 TMEM52Q8NDY8 209 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 OR52R1Q8NGF1 315 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 OR51L1Q8NGJ5 315 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 ZNRF4Q8WWF5 429 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 PIGKQ92643 395 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 THRSPQ92748 146 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 RERGQ96A58 199 aaPredicted RBP12.11□□□□□ -0.47
VRK3-209ENST00000594948 ANKRD9Q96BM1 317 aaPredicted RBP12.11□□□□□ -0.47
VRK3-209ENST00000594948 MNTQ99583 582 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 LMAN2LQ9H0V9 348 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 CDCP1Q9H5V8 836 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 RXFP3Q9NSD7 469 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 CXXC1Q9P0U4 656 aaPredicted RBP12.11□□□□□ -0.47
VRK3-209ENST00000594948 PCDH10Q9P2E7 1040 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 FANCMQ8IYD8 2048 aa12.11□□□□□ -0.47
VRK3-209ENST00000594948 TP53BP1Q12888 1972 aaPredicted RBP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms