RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 DNAJA4Q8WW22 397 aaPredicted RBP11□□□□□ -0.65
UPF1-203ENST00000594504 HTRA1Q92743 480 aa11□□□□□ -0.65
UPF1-203ENST00000594504 PROX1Q92786 737 aa11□□□□□ -0.65
UPF1-203ENST00000594504 ZHX1-C8orf76Q96EF9 292 aa11□□□□□ -0.65
UPF1-203ENST00000594504 ARL5BQ96KC2 179 aa11□□□□□ -0.65
UPF1-203ENST00000594504 KCTD14Q9BQ13 255 aaPredicted RBP11□□□□□ -0.65
UPF1-203ENST00000594504 OR11A1Q9GZK7 315 aa11□□□□□ -0.65
UPF1-203ENST00000594504 C12orf10Q9HB07 376 aa11□□□□□ -0.65
UPF1-203ENST00000594504 TMEM181Q9P2C4 612 aa11□□□□□ -0.65
UPF1-203ENST00000594504 BAG5Q9UL15 447 aa11□□□□□ -0.65
UPF1-203ENST00000594504 TRAPPC4Q9Y296 219 aa11□□□□□ -0.65
UPF1-203ENST00000594504 B3GALT5Q9Y2C3 310 aa11□□□□□ -0.65
UPF1-203ENST00000594504 SLC9A8Q9Y2E8 581 aa11□□□□□ -0.65
UPF1-203ENST00000594504 ROS1P08922 2347 aa11□□□□□ -0.65
UPF1-203ENST00000594504 A0A1B0GWA3 101 aa10.99□□□□□ -0.65
UPF1-203ENST00000594504 ZNF724A8MTY0 619 aa10.99□□□□□ -0.65
UPF1-203ENST00000594504 A8MVM7 634 aa10.99□□□□□ -0.65
UPF1-203ENST00000594504 TMEM229AB2RXF0 380 aa10.99□□□□□ -0.65
UPF1-203ENST00000594504 M0R3H8 397 aa10.99□□□□□ -0.65
UPF1-203ENST00000594504 ABCD4O14678 606 aa10.99□□□□□ -0.65
UPF1-203ENST00000594504 GSTA4O15217 222 aa10.99□□□□□ -0.65
UPF1-203ENST00000594504 SSX4O60224 188 aa10.99□□□□□ -0.65
UPF1-203ENST00000594504 GPRIN2O60269 458 aa10.99□□□□□ -0.65
UPF1-203ENST00000594504 RAD51DO75771 328 aa10.99□□□□□ -0.65
UPF1-203ENST00000594504 PNMTP11086 282 aa10.99□□□□□ -0.65
UPF1-203ENST00000594504 GGT1P19440 569 aa10.99□□□□□ -0.65
UPF1-203ENST00000594504 SPOCK1Q08629 439 aa10.99□□□□□ -0.65
UPF1-203ENST00000594504 ULK3Q6PHR2 472 aa10.99□□□□□ -0.65
UPF1-203ENST00000594504 C16orf89Q6UX73 402 aa10.99□□□□□ -0.65
UPF1-203ENST00000594504 CXXC5Q7LFL8 322 aaKnown RBP10.99□□□□□ -0.65
UPF1-203ENST00000594504 GALNT5Q7Z7M9 940 aa10.99□□□□□ -0.65
UPF1-203ENST00000594504 CCDC103Q8IW40 242 aa10.99□□□□□ -0.65
UPF1-203ENST00000594504 UBE2J2Q8N2K1 259 aa10.99□□□□□ -0.65
UPF1-203ENST00000594504 PIAS4Q8N2W9 510 aaPredicted RBP10.99□□□□□ -0.65
UPF1-203ENST00000594504 ZNF433Q8N7K0 673 aaPredicted RBP10.99□□□□□ -0.65
UPF1-203ENST00000594504 OR52N5Q8NH56 324 aa10.99□□□□□ -0.65
UPF1-203ENST00000594504 MUCL1Q96DR8 90 aa10.99□□□□□ -0.65
UPF1-203ENST00000594504 WFDC6Q9BQY6 131 aa10.99□□□□□ -0.65
UPF1-203ENST00000594504 C1QTNF6Q9BXI9 259 aa10.99□□□□□ -0.65
UPF1-203ENST00000594504 TMEM27Q9HBJ8 222 aa10.99□□□□□ -0.65
UPF1-203ENST00000594504 YAE1D1Q9NRH1 226 aa10.99□□□□□ -0.65
UPF1-203ENST00000594504 ADA2Q9NZK5 511 aa10.99□□□□□ -0.65
UPF1-203ENST00000594504 SELENONQ9NZV5 590 aa10.99□□□□□ -0.65
UPF1-203ENST00000594504 GMPR2Q9P2T1 348 aaKnown RBP10.99□□□□□ -0.65
UPF1-203ENST00000594504 MAP1AP78559 2803 aaPredicted RBP10.99□□□□□ -0.65
UPF1-203ENST00000594504 A0A0B4J2E0 115 aa10.98□□□□□ -0.65
UPF1-203ENST00000594504 A0A1B0GX12 115 aa10.98□□□□□ -0.65
UPF1-203ENST00000594504 ZC3H12DA2A288 527 aaKnown RBP10.98□□□□□ -0.65
UPF1-203ENST00000594504 ELOA3DA6NLF2 546 aaPredicted RBP10.98□□□□□ -0.65
UPF1-203ENST00000594504 ZNF716A6NP11 495 aa10.98□□□□□ -0.65
UPF1-203ENST00000594504 E7EQL1 145 aa10.98□□□□□ -0.65
UPF1-203ENST00000594504 CXCR6O00574 342 aa10.98□□□□□ -0.65
UPF1-203ENST00000594504 TPST2O60704 377 aa10.98□□□□□ -0.65
UPF1-203ENST00000594504 COX5AP20674 150 aa10.98□□□□□ -0.65
UPF1-203ENST00000594504 ZNF83P51522 516 aa10.98□□□□□ -0.65
UPF1-203ENST00000594504 CDH11P55287 796 aa10.98□□□□□ -0.65
UPF1-203ENST00000594504 MXRA7P84157 204 aa10.98□□□□□ -0.65
UPF1-203ENST00000594504 BNIP2Q12982 314 aa10.98□□□□□ -0.65
UPF1-203ENST00000594504 OR1Q1Q15612 314 aa10.98□□□□□ -0.65
UPF1-203ENST00000594504 NPTX1Q15818 432 aa10.98□□□□□ -0.65
UPF1-203ENST00000594504 ELOA3BQ3SY89 546 aa10.98□□□□□ -0.65
UPF1-203ENST00000594504 CYBRD1Q53TN4 286 aa10.98□□□□□ -0.65
UPF1-203ENST00000594504 ALG10BQ5I7T1 473 aa10.98□□□□□ -0.65
UPF1-203ENST00000594504 TIMM23BQ5SRD1 257 aa10.98□□□□□ -0.65
UPF1-203ENST00000594504 SWT1Q5T5J6 900 aaKnown RBP10.98□□□□□ -0.65
UPF1-203ENST00000594504 ZNF613Q6PF04 617 aa10.98□□□□□ -0.65
UPF1-203ENST00000594504 DNM1P46Q6ZS02 220 aa10.98□□□□□ -0.65
UPF1-203ENST00000594504 ELOA3Q8NG57 546 aa10.98□□□□□ -0.65
UPF1-203ENST00000594504 OR6T1Q8NGN1 323 aa10.98□□□□□ -0.65
UPF1-203ENST00000594504 VANGL1Q8TAA9 524 aaPredicted RBP10.98□□□□□ -0.65
UPF1-203ENST00000594504 STK35Q8TDR2 534 aa10.98□□□□□ -0.65
UPF1-203ENST00000594504 LZICQ8WZA0 190 aa10.98□□□□□ -0.65
UPF1-203ENST00000594504 SLC47A1Q96FL8 570 aa10.98□□□□□ -0.65
UPF1-203ENST00000594504 NSL1Q96IY1 281 aa10.98□□□□□ -0.65
UPF1-203ENST00000594504 MCHR1Q99705 422 aa10.98□□□□□ -0.65
UPF1-203ENST00000594504 PRR14Q9BWN1 585 aa10.98□□□□□ -0.65
UPF1-203ENST00000594504 PCDHAC1Q9H158 963 aa10.98□□□□□ -0.65
UPF1-203ENST00000594504 ADPRHL2Q9NX46 363 aa10.98□□□□□ -0.65
UPF1-203ENST00000594504 NOSIPQ9Y314 301 aaKnown RBP10.98□□□□□ -0.65
UPF1-203ENST00000594504 NIPBLQ6KC79 2804 aaeCLIP10.98□□□□□ -0.65
UPF1-203ENST00000594504 ABCA2Q9BZC7 2435 aa10.97□□□□□ -0.65
UPF1-203ENST00000594504 DNHD1Q96M86 4753 aa10.97□□□□□ -0.65
UPF1-203ENST00000594504 CIB4A0PJX0 185 aa10.97□□□□□ -0.65
UPF1-203ENST00000594504 OR5H1A6NKK0 313 aa10.97□□□□□ -0.65
UPF1-203ENST00000594504 EIF1BO60739 113 aaKnown RBP10.97□□□□□ -0.65
UPF1-203ENST00000594504 NPIPB7O75200 414 aa10.97□□□□□ -0.65
UPF1-203ENST00000594504 GPIP06744 558 aa10.97□□□□□ -0.65
UPF1-203ENST00000594504 IMPDH2P12268 514 aa10.97□□□□□ -0.65
UPF1-203ENST00000594504 CALB2P22676 271 aa10.97□□□□□ -0.65
UPF1-203ENST00000594504 OR2B6P58173 313 aa10.97□□□□□ -0.65
UPF1-203ENST00000594504 SLC35A1P78382 337 aa10.97□□□□□ -0.65
UPF1-203ENST00000594504 SLC25A3Q00325 362 aa10.97□□□□□ -0.65
UPF1-203ENST00000594504 SPATS1Q496A3 300 aa10.97□□□□□ -0.65
UPF1-203ENST00000594504 SAMD4BQ5PRF9 694 aaKnown RBP10.97□□□□□ -0.65
UPF1-203ENST00000594504 C9orf135Q5VTT2 229 aa10.97□□□□□ -0.65
UPF1-203ENST00000594504 C1orf140Q5VVS0 124 aa10.97□□□□□ -0.65
UPF1-203ENST00000594504 FBXW9Q5XUX1 488 aa10.97□□□□□ -0.65
UPF1-203ENST00000594504 ABLIM2Q6H8Q1 611 aa10.97□□□□□ -0.65
UPF1-203ENST00000594504 HMBOX1Q6NT76 420 aa10.97□□□□□ -0.65
UPF1-203ENST00000594504 C5orf46Q6UWT4 87 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms