RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	RADIL	Q96JH8	1075 aa		14.05	□□□□□ -0.16
DDX39A-209	ENST00000589318	LPAR4	Q99677	370 aa		14.05	□□□□□ -0.16
DDX39A-209	ENST00000589318	KLHDC3	Q9BQ90	382 aa		14.05	□□□□□ -0.16
DDX39A-209	ENST00000589318	MED18	Q9BUE0	208 aa		14.05	□□□□□ -0.16
DDX39A-209	ENST00000589318	BARHL1	Q9BZE3	327 aa		14.05	□□□□□ -0.16
DDX39A-209	ENST00000589318	SSR3	Q9UNL2	185 aa		14.05	□□□□□ -0.16
DDX39A-209	ENST00000589318	PCNX3	Q9H6A9	2034 aa		14.05	□□□□□ -0.16
DDX39A-209	ENST00000589318	ADAM10	O14672	748 aa		14.04	□□□□□ -0.16
DDX39A-209	ENST00000589318	RAF1	P04049	648 aa		14.04	□□□□□ -0.16
DDX39A-209	ENST00000589318	NGFR	P08138	427 aa		14.04	□□□□□ -0.16
DDX39A-209	ENST00000589318	MAK	P20794	623 aa		14.04	□□□□□ -0.16
DDX39A-209	ENST00000589318	AZGP1	P25311	298 aa	Known RBP	14.04	□□□□□ -0.16
DDX39A-209	ENST00000589318	STAT5A	P42229	794 aa		14.04	□□□□□ -0.16
DDX39A-209	ENST00000589318	RAB14	P61106	215 aa		14.04	□□□□□ -0.16
DDX39A-209	ENST00000589318	SNRPD2	P62316	118 aa	Known RBP	14.04	□□□□□ -0.16
DDX39A-209	ENST00000589318	NCF4	Q15080	339 aa		14.04	□□□□□ -0.16
DDX39A-209	ENST00000589318	SSX1	Q16384	188 aa		14.04	□□□□□ -0.16
DDX39A-209	ENST00000589318	PYDC2	Q56P42	97 aa		14.04	□□□□□ -0.16
DDX39A-209	ENST00000589318	DCAF12	Q5T6F0	453 aa		14.04	□□□□□ -0.16
DDX39A-209	ENST00000589318	RAB11FIP2	Q7L804	512 aa		14.04	□□□□□ -0.16
DDX39A-209	ENST00000589318	MRGPRE	Q86SM8	312 aa		14.04	□□□□□ -0.16
DDX39A-209	ENST00000589318	LURAP1L	Q8IV03	231 aa		14.04	□□□□□ -0.16
DDX39A-209	ENST00000589318	ZNF440	Q8IYI8	595 aa		14.04	□□□□□ -0.16
DDX39A-209	ENST00000589318	OR8H3	Q8N146	312 aa		14.04	□□□□□ -0.16
DDX39A-209	ENST00000589318	WDR36	Q8NI36	951 aa	Known RBP	14.04	□□□□□ -0.16
DDX39A-209	ENST00000589318	PHOSPHO1	Q8TCT1	267 aa		14.04	□□□□□ -0.16
DDX39A-209	ENST00000589318	ZNF524	Q96C55	264 aa		14.04	□□□□□ -0.16
DDX39A-209	ENST00000589318	LIN37	Q96GY3	246 aa	Predicted RBP	14.04	□□□□□ -0.16
DDX39A-209	ENST00000589318	DIRAS2	Q96HU8	199 aa		14.04	□□□□□ -0.16
DDX39A-209	ENST00000589318	CDC6	Q99741	560 aa		14.04	□□□□□ -0.16
DDX39A-209	ENST00000589318	PRRG3	Q9BZD7	231 aa		14.04	□□□□□ -0.16
DDX39A-209	ENST00000589318	STRADB	Q9C0K7	418 aa		14.04	□□□□□ -0.16
DDX39A-209	ENST00000589318	SLC25A19	Q9HC21	320 aa		14.04	□□□□□ -0.16
DDX39A-209	ENST00000589318	EXOSC3	Q9NQT5	275 aa	Known RBP	14.04	□□□□□ -0.16
DDX39A-209	ENST00000589318	AKAP7	Q9P0M2	348 aa	Predicted RBP	14.04	□□□□□ -0.16
DDX39A-209	ENST00000589318	FAM240B	A0A1B0GVZ2	78 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318		A0A1W2PRG6	482 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	SNAPC5	O75971	98 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	STK17B	O94768	372 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	HPGD	P15428	266 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	ARSB	P15848	533 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	SNRPG	P62308	76 aa	Known RBP	14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	EFNB1	P98172	346 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	SNTA1	Q13424	505 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	GINS1	Q14691	196 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	PCOLCE	Q15113	449 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	CSRP2	Q16527	193 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	ALG10B	Q5I7T1	473 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	GPR139	Q6DWJ6	353 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	ZNF620	Q6ZNG0	422 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	PTCHD4	Q6ZW05	846 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	COMMD7	Q86VX2	200 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	NLGN4Y	Q8NFZ3	816 aa	Predicted RBP	14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	OR8K3	Q8NH51	312 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	FGF11	Q92914	225 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	UQCC2	Q9BRT2	126 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	EMC7	Q9NPA0	242 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	EXOSC4	Q9NPD3	245 aa	Known RBP	14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	CLN6	Q9NWW5	311 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	C19orf25	Q9UFG5	118 aa	Predicted RBP	14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	GPN3	Q9UHW5	284 aa	Predicted RBP	14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	MPDZ	O75970	2070 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	SDK2	Q58EX2	2172 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	TRBV11-1	A0A0K0K1C0	115 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318		A0A1W2PQD3	144 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	C17orf51	A8MQB3	221 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	ALG1L2	C9J202	215 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	ZNF264	O43296	627 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	HOXD4	P09016	255 aa	Predicted RBP	14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	RRAS	P10301	218 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	FUT1	P19526	365 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	MST1	P26927	711 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	SDC2	P34741	201 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	RBM34	P42696	430 aa	Known RBP	14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	GBX2	P52951	348 aa	Predicted RBP	14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	NUDT6	P53370	316 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	CTBP2	P56545	445 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	FXYD6P3	P58550	94 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	PPP3R1	P63098	170 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	TMEM201	Q5SNT2	666 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	ULK3	Q6PHR2	472 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	PAMR1	Q6UXH9	720 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	PRSS33	Q8NF86	280 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	ZNF431	Q8TF32	576 aa	Predicted RBP	14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	OPALIN	Q96PE5	141 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	DPH1	Q9BZG8	443 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	SPRY4	Q9C004	299 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	CLEC4M	Q9H2X3	399 aa	Predicted RBP	14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	AMBN	Q9NP70	447 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	MCUB	Q9NWR8	336 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	PTRH2	Q9Y3E5	179 aa	Known RBP	14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	NPFFR2	Q9Y5X5	522 aa		14.03	□□□□□ -0.16
DDX39A-209	ENST00000589318	LINC00854	A0A1B0GVQ3	168 aa		14.02	□□□□□ -0.16
DDX39A-209	ENST00000589318		C9J4A7	227 aa		14.02	□□□□□ -0.16
DDX39A-209	ENST00000589318	FADS1	O60427	444 aa		14.02	□□□□□ -0.16
DDX39A-209	ENST00000589318	CS	O75390	466 aa	Known RBP	14.02	□□□□□ -0.16
DDX39A-209	ENST00000589318	FAM157B	P0CG42	384 aa		14.02	□□□□□ -0.16
DDX39A-209	ENST00000589318	HK1	P19367	917 aa		14.02	□□□□□ -0.16
DDX39A-209	ENST00000589318	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	14.02	□□□□□ -0.16	7e-7	■□□□□ 8.4
DDX39A-209	ENST00000589318	TMPRSS11F	Q6ZWK6	438 aa		14.02	□□□□□ -0.16

Retrieved 100 of 20,778 RNA–protein pairs in 34 ms