RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	TAB1	Q15750	504 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	CTSL3P	Q5NE16	218 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	ZNF544	Q6NX49	715 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	XKRX	Q6PP77	449 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	ATRAID	Q6UW56	229 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	HACD2	Q6Y1H2	254 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	ZNF767P	Q75MW2	155 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	C16orf82	Q7Z2V1	217 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	DEFB132	Q7Z7B7	95 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	TRPT1	Q86TN4	253 aa	Known RBP	4.15	□□□□□ -1.75
SS18-223	ENST00000583595	BIVM	Q86UB2	503 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	NT5DC3	Q86UY8	548 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	CARM1	Q86X55	608 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	STX12	Q86Y82	276 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	NKAIN4	Q8IVV8	208 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	OFCC1	Q8IZS5	231 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	KCNG3	Q8TAE7	436 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	KCTD4	Q8WVF5	259 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	ST8SIA1	Q92185	356 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	DYRK2	Q92630	601 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	CD101	Q93033	1021 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	TADA1	Q96BN2	335 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	ARL5B	Q96KC2	179 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	TMEM246	Q9BRR3	403 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	TMEM121	Q9BTD3	319 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	KIFC1	Q9BW19	673 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	RBM4	Q9BWF3	364 aa	Known RBP	4.15	□□□□□ -1.75
SS18-223	ENST00000583595	CHID1	Q9BWS9	393 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	TSSK1B	Q9BXA7	367 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	PINK1	Q9BXM7	581 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	YTHDF1	Q9BYJ9	559 aa	Known RBP	4.15	□□□□□ -1.75
SS18-223	ENST00000583595	COMMD4	Q9H0A8	199 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	POLR3F	Q9H1D9	316 aa	Predicted RBP	4.15	□□□□□ -1.75
SS18-223	ENST00000583595	LRRN3	Q9H3W5	708 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	TRABD	Q9H4I3	376 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	NANOG	Q9H9S0	305 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	MRPL40	Q9NQ50	206 aa	Known RBP	4.15	□□□□□ -1.75
SS18-223	ENST00000583595	TAS2R16	Q9NYV7	291 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	ANAPC7	Q9UJX3	599 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	STOML2	Q9UJZ1	356 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	FAM208A	Q9UK61	1670 aa	Known RBP	4.15	□□□□□ -1.75
SS18-223	ENST00000583595	RTL9	Q8NET4	1388 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	PALLD	Q8WX93	1383 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	MYH10	P35580	1976 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	MRC1	P22897	1456 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595		A0A0G2JND7	137 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	LRP5L	A4QPB2	252 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	ZNF98	A6NK75	572 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	ZNF724	A8MTY0	619 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	LAD1	O00515	517 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	OR7A17	O14581	309 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	SURF4	O15260	269 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	ARHGEF9	O43307	516 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	AKR7A2	O43488	359 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	SMAD6	O43541	496 aa	Known RBP	4.14	□□□□□ -1.75
SS18-223	ENST00000583595	TPST2	O60704	377 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	STX11	O75558	287 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	CDC123	O75794	336 aa	Predicted RBP	4.14	□□□□□ -1.75
SS18-223	ENST00000583595	OAZ2	O95190	189 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	SNAPIN	O95295	136 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	TSPAN12	O95859	305 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	CALB1	P05937	261 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	TRAPPC2	P0DI81	140 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	TRAPPC2B	P0DI82	140 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	OR8G3P	P0DMU2	310 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	F8A1	P23610	371 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	PTBP1	P26599	531 aa	Known RBP eCLIP	4.14	□□□□□ -1.75
SS18-223	ENST00000583595	CDH5	P33151	784 aa	Predicted RBP	4.14	□□□□□ -1.75
SS18-223	ENST00000583595	UGT2B10	P36537	528 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	SERPINB5	P36952	375 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	DDOST	P39656	456 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	HTR2B	P41595	481 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	P2RY1	P47900	373 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	ZFP36L2	P47974	494 aa	Known RBP	4.14	□□□□□ -1.75
SS18-223	ENST00000583595	NOVA1	P51513	510 aa	Known RBP	4.14	□□□□□ -1.75
SS18-223	ENST00000583595	GSTO1	P78417	241 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	NTHL1	P78549	312 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	GNA12	Q03113	381 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	BST2	Q10589	180 aa	Known RBP	4.14	□□□□□ -1.75
SS18-223	ENST00000583595	C1orf61	Q13536	156 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	ATXN7L3	Q14CW9	347 aa	Predicted RBP	4.14	□□□□□ -1.75
SS18-223	ENST00000583595	TMED2	Q15363	201 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	KIAA1644	Q3SXP7	199 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	ZFP69	Q49AA0	526 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	UNC50	Q53HI1	259 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	YIF1B	Q5BJH7	314 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	C6orf52	Q5T4I8	152 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	PRSS57	Q6UWY2	283 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	4.14	□□□□□ -1.75
SS18-223	ENST00000583595	CHMP1B	Q7LBR1	199 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	ANKRD37	Q7Z713	158 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	NFE4	Q86UQ8	179 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	STPG4	Q8N801	248 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	FNDC5	Q8NAU1	212 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	TMEM178A	Q8NBL3	297 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	ZNF680	Q8NEM1	530 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	BPIFC	Q8NFQ6	507 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	OR10G8	Q8NGN5	311 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	OR1K1	Q8NGR3	316 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	OR8K3	Q8NH51	312 aa		4.14	□□□□□ -1.75

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