RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 ARL5BQ96KC2 179 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 FER1L6-AS2Q96M78 137 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 TSPAN32Q96QS1 320 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 OR5M11Q96RB7 305 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 ZNF587Q96SQ5 575 aaPredicted RBP9.49□□□□□ -0.89
SS18-217ENST00000580958 ASPNQ9BXN1 380 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 OR51V1Q9H2C8 321 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 SERINC1Q9NRX5 453 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 SACM1LQ9NTJ5 587 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 EXOGQ9Y2C4 368 aaKnown RBP9.49□□□□□ -0.89
SS18-217ENST00000580958 ARGFXA6NJG6 315 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 H3BML4 177 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 ZNF701M0R085 212 aaPredicted RBP9.48□□□□□ -0.89
SS18-217ENST00000580958 M0R3G1 203 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 IMPA2O14732 288 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 NOL3O60936 208 aaKnown RBP9.48□□□□□ -0.89
SS18-217ENST00000580958 SERPINI2O75830 405 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 DXOO77932 396 aaKnown RBP9.48□□□□□ -0.89
SS18-217ENST00000580958 SNX4O95219 450 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 OR6A2O95222 327 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 OPN1LWP04000 364 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 GYPBP06028 91 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 CLUP10909 449 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 APEHP13798 732 aaKnown RBP9.48□□□□□ -0.89
SS18-217ENST00000580958 PAICSP22234 425 aaKnown RBP9.48□□□□□ -0.89
SS18-217ENST00000580958 IDUAP35475 653 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 TGFBR2P37173 567 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 CYB561P49447 251 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 ETV1P50549 477 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 RPS7P62081 194 aaKnown RBP9.48□□□□□ -0.89
SS18-217ENST00000580958 NHLH1Q02575 133 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 DOC2BQ14184 412 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 OR7A5Q15622 319 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 LEG1Q6P5S2 330 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 B3GNT6Q6ZMB0 384 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 LIAT1Q6ZQX7 453 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 FAM122BQ7Z309 247 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 JAZF1Q86VZ6 243 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 NPEPL1Q8NDH3 523 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 PSD4Q8NDX1 1056 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 OR51G2Q8NGK0 314 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 OR9Q1Q8NGQ5 310 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 MFSD8Q8NHS3 518 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 ZNF420Q8TAQ5 688 aaPredicted RBP9.48□□□□□ -0.89
SS18-217ENST00000580958 ZPLD1Q8TCW7 415 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 KISS1RQ969F8 398 aaPredicted RBP9.48□□□□□ -0.89
SS18-217ENST00000580958 ZBTB8AQ96BR9 441 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 GNRHR2Q96P88 292 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 DDOQ99489 341 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 FUNDC2Q9BWH2 189 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 POTEKPQ9BYX7 375 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 TMEM185BQ9H7F4 350 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 TIMMDC1Q9NPL8 285 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 INIPQ9NRY2 104 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 MRPL39Q9NYK5 338 aaKnown RBP9.48□□□□□ -0.89
SS18-217ENST00000580958 TAS2R5Q9NYW4 299 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 STMN3Q9NZ72 180 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 ABI3Q9P2A4 366 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 TEKT2Q9UIF3 430 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 ENPP5Q9UJA9 477 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 DKKL1Q9UK85 242 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 CDV3Q9UKY7 258 aaKnown RBP9.48□□□□□ -0.89
SS18-217ENST00000580958 ERGIC3Q9Y282 383 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 RPH3AQ9Y2J0 694 aaPredicted RBP9.48□□□□□ -0.89
SS18-217ENST00000580958 LSM2Q9Y333 95 aaKnown RBP9.48□□□□□ -0.89
SS18-217ENST00000580958 EXOSC1Q9Y3B2 195 aaKnown RBP9.48□□□□□ -0.89
SS18-217ENST00000580958 SPIN1Q9Y657 262 aaPredicted RBP9.48□□□□□ -0.89
SS18-217ENST00000580958 DMXL1Q9Y485 3027 aa9.48□□□□□ -0.89
SS18-217ENST00000580958 CFAP54Q96N23 3096 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 OR6C68A6NDL8 312 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 LIPT2A6NK58 231 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 SLC22A31A6NKX4 558 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 H3BMQ9 156 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 PLPP3O14495 311 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 MYL12BO14950 172 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 NKX2-8O15522 239 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 RNF13O43567 381 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 TXNDC12O95881 172 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 PLGP00747 810 aaPredicted RBP9.47□□□□□ -0.89
SS18-217ENST00000580958 HSMCR30P0CW71 290 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 PRKAR1AP10644 381 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 MYL12AP19105 171 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 NR4A1P22736 598 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 ADH6P28332 368 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 GTF2E2P29084 291 aaKnown RBP9.47□□□□□ -0.89
SS18-217ENST00000580958 SHC1P29353 583 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 GSTT1P30711 240 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 SDHAP31040 664 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 LIPAP38571 399 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 CD96P40200 585 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 CD79BP40259 229 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 CASRP41180 1078 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 EIF1P41567 113 aaKnown RBP9.47□□□□□ -0.89
SS18-217ENST00000580958 CDKN2AP42771 156 aaKnown RBP9.47□□□□□ -0.89
SS18-217ENST00000580958 MAP2K6P52564 334 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 SLC16A1P53985 500 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 TMBIM6P55061 237 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 DSCR4P56555 118 aaPredicted RBP9.47□□□□□ -0.89
SS18-217ENST00000580958 PRR20EP86478 221 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 PRR20CP86479 221 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms