RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 FOXK1P85037 733 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 FOXK2Q01167 660 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 CD47Q08722 323 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 CDK5R2Q13319 367 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 POU4F3Q15319 338 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 SNAPC1Q16533 368 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 OCLNQ16625 522 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 CTU2Q2VPK5 515 aaKnown RBP13.71□□□□□ -0.21
SS18-215ENST00000580642 CLEC12AQ5QGZ9 265 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 ACSM5Q6NUN0 579 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 UGT2A3Q6UWM9 527 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 TRILQ7L0X0 811 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 HDDC2Q7Z4H3 204 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 CCDC71Q8IV32 467 aaPredicted RBP13.71□□□□□ -0.21
SS18-215ENST00000580642 ENTHD1Q8IYW4 607 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 OR4Q3Q8NH05 313 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 TMEM163Q8TC26 289 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 ABTB1Q969K4 478 aaPredicted RBP13.71□□□□□ -0.21
SS18-215ENST00000580642 ZNF566Q969W8 418 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 CPNE4Q96A23 557 aaPredicted RBP13.71□□□□□ -0.21
SS18-215ENST00000580642 PLEKHA8Q96JA3 519 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 SF3B5Q9BWJ5 86 aaKnown RBP13.71□□□□□ -0.21
SS18-215ENST00000580642 INIPQ9NRY2 104 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 PLCXD1Q9NUJ7 323 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 TVP23BQ9NYZ1 205 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 UBAP1Q9NZ09 502 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 RNF6Q9Y252 685 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 TP53TG5Q9Y2B4 290 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 NOX1Q9Y5S8 564 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 A0A0J9YW62 118 aa13.7□□□□□ -0.22
SS18-215ENST00000580642 OR14I1A6ND48 311 aa13.7□□□□□ -0.22
SS18-215ENST00000580642 AQP7P3A6NL99 342 aa13.7□□□□□ -0.22
SS18-215ENST00000580642 RIIAD1A6NNX1 92 aa13.7□□□□□ -0.22
SS18-215ENST00000580642 AQP7O14520 342 aa13.7□□□□□ -0.22
SS18-215ENST00000580642 TNFAIP8O95379 198 aa13.7□□□□□ -0.22
SS18-215ENST00000580642 ADORA3P0DMS8 318 aa13.7□□□□□ -0.22
SS18-215ENST00000580642 ZNF3P17036 446 aa13.7□□□□□ -0.22
SS18-215ENST00000580642 NOS3P29474 1203 aa13.7□□□□□ -0.22
SS18-215ENST00000580642 SDHAP31040 664 aa13.7□□□□□ -0.22
SS18-215ENST00000580642 DAP3P51398 398 aaKnown RBP13.7□□□□□ -0.22
SS18-215ENST00000580642 TMED1Q13445 227 aa13.7□□□□□ -0.22
SS18-215ENST00000580642 LINC00303Q3SY05 128 aa13.7□□□□□ -0.22
SS18-215ENST00000580642 KCTD21Q4G0X4 260 aa13.7□□□□□ -0.22
SS18-215ENST00000580642 KRTCAP3Q53RY4 240 aa13.7□□□□□ -0.22
SS18-215ENST00000580642 RNFT1Q5M7Z0 435 aa13.7□□□□□ -0.22
SS18-215ENST00000580642 C6orf141Q5SZD1 244 aa13.7□□□□□ -0.22
SS18-215ENST00000580642 TMEM236Q5W0B7 351 aa13.7□□□□□ -0.22
SS18-215ENST00000580642 HBMQ6B0K9 141 aa13.7□□□□□ -0.22
SS18-215ENST00000580642 Q6ZPB1 254 aaPredicted RBP13.7□□□□□ -0.22
SS18-215ENST00000580642 FAM122BQ7Z309 247 aa13.7□□□□□ -0.22
SS18-215ENST00000580642 ADCK1Q86TW2 530 aa13.7□□□□□ -0.22
SS18-215ENST00000580642 SIAH3Q8IW03 269 aa13.7□□□□□ -0.22
SS18-215ENST00000580642 PM20D2Q8IYS1 436 aa13.7□□□□□ -0.22
SS18-215ENST00000580642 RFKQ969G6 155 aa13.7□□□□□ -0.22
SS18-215ENST00000580642 OXGR1Q96P68 337 aa13.7□□□□□ -0.22
SS18-215ENST00000580642 TXNIPQ9H3M7 391 aa13.7□□□□□ -0.22
SS18-215ENST00000580642 LDAHQ9H6V9 325 aa13.7□□□□□ -0.22
SS18-215ENST00000580642 TMEM185BQ9H7F4 350 aa13.7□□□□□ -0.22
SS18-215ENST00000580642 CLN6Q9NWW5 311 aa13.7□□□□□ -0.22
SS18-215ENST00000580642 ZNF226Q9NYT6 803 aa13.7□□□□□ -0.22
SS18-215ENST00000580642 GRHPRQ9UBQ7 328 aa13.7□□□□□ -0.22
SS18-215ENST00000580642 MYRFQ9Y2G1 1151 aa13.7□□□□□ -0.22
SS18-215ENST00000580642 PCNX3Q9H6A9 2034 aa13.69□□□□□ -0.22
SS18-215ENST00000580642 PTPRQQ9UMZ3 2332 aa13.69□□□□□ -0.22
SS18-215ENST00000580642 ASPMQ8IZT6 3477 aa13.69□□□□□ -0.22
SS18-215ENST00000580642 EML6Q6ZMW3 1958 aa13.69□□□□□ -0.22
SS18-215ENST00000580642 A0A1W2PNR3 127 aa13.69□□□□□ -0.22
SS18-215ENST00000580642 A0A1W2PRG6 482 aa13.69□□□□□ -0.22
SS18-215ENST00000580642 A6NIZ1 184 aa13.69□□□□□ -0.22
SS18-215ENST00000580642 CENPBD1B2RD01 187 aa13.69□□□□□ -0.22
SS18-215ENST00000580642 MCIDASD6RGH6 385 aa13.69□□□□□ -0.22
SS18-215ENST00000580642 MS4A18H0YCH9 400 aa13.69□□□□□ -0.22
SS18-215ENST00000580642 RNF13O43567 381 aa13.69□□□□□ -0.22
SS18-215ENST00000580642 MRPS14O60783 128 aaKnown RBP13.69□□□□□ -0.22
SS18-215ENST00000580642 CELA3AP09093 270 aa13.69□□□□□ -0.22
SS18-215ENST00000580642 PAICSP22234 425 aaKnown RBP13.69□□□□□ -0.22
SS18-215ENST00000580642 ENPP1P22413 925 aa13.69□□□□□ -0.22
SS18-215ENST00000580642 TCEA1P23193 301 aaKnown RBP13.69□□□□□ -0.22
SS18-215ENST00000580642 SHC1P29353 583 aa13.69□□□□□ -0.22
SS18-215ENST00000580642 RFC3P40938 356 aa13.69□□□□□ -0.22
SS18-215ENST00000580642 P2RY4P51582 365 aa13.69□□□□□ -0.22
SS18-215ENST00000580642 CLDN18P56856 261 aa13.69□□□□□ -0.22
SS18-215ENST00000580642 CTXN1P60606 82 aa13.69□□□□□ -0.22
SS18-215ENST00000580642 RAP1BP61224 184 aa13.69□□□□□ -0.22
SS18-215ENST00000580642 RAP1AP62834 184 aa13.69□□□□□ -0.22
SS18-215ENST00000580642 SF3B4Q15427 424 aaKnown RBP eCLIP13.69□□□□□ -0.22
SS18-215ENST00000580642 MS4A18Q3C1V0 323 aa13.69□□□□□ -0.22
SS18-215ENST00000580642 IQCF1Q8N6M8 205 aa13.69□□□□□ -0.22
SS18-215ENST00000580642 MOSPD2Q8NHP6 518 aa13.69□□□□□ -0.22
SS18-215ENST00000580642 ERMAPQ96PL5 475 aaPredicted RBP13.69□□□□□ -0.22
SS18-215ENST00000580642 KATNB1Q9BVA0 655 aa13.69□□□□□ -0.22
SS18-215ENST00000580642 ENKD1Q9H0I2 346 aa13.69□□□□□ -0.22
SS18-215ENST00000580642 SLC6A15Q9H2J7 730 aa13.69□□□□□ -0.22
SS18-215ENST00000580642 SCN3BQ9NY72 215 aa13.69□□□□□ -0.22
SS18-215ENST00000580642 LHX6Q9UPM6 363 aa13.69□□□□□ -0.22
SS18-215ENST00000580642 MAGEA13PA6NCF6 341 aa13.68□□□□□ -0.22
SS18-215ENST00000580642 TRIM64A6NGJ6 449 aa13.68□□□□□ -0.22
SS18-215ENST00000580642 EIF1AYO14602 144 aaKnown RBP13.68□□□□□ -0.22
SS18-215ENST00000580642 TNFSF11O14788 317 aa13.68□□□□□ -0.22
SS18-215ENST00000580642 TLX2O43763 284 aaPredicted RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms