RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 SLC41A3Q96GZ6 507 aa13.05□□□□□ -0.32
SS18-212ENST00000579061 LINC00470Q9BZP3 86 aa13.05□□□□□ -0.32
SS18-212ENST00000579061 ARMCX1Q9P291 453 aa13.05□□□□□ -0.32
SS18-212ENST00000579061 B3GAT1Q9P2W7 334 aa13.05□□□□□ -0.32
SS18-212ENST00000579061 BAG5Q9UL15 447 aa13.05□□□□□ -0.32
SS18-212ENST00000579061 MGAT4BQ9UQ53 548 aa13.05□□□□□ -0.32
SS18-212ENST00000579061 RCE1Q9Y256 329 aa13.05□□□□□ -0.32
SS18-212ENST00000579061 AMDHD2Q9Y303 409 aa13.05□□□□□ -0.32
SS18-212ENST00000579061 ALPK2Q86TB3 2170 aa13.05□□□□□ -0.32
SS18-212ENST00000579061 ZNF469Q96JG9 3925 aaPredicted RBP13.04□□□□□ -0.32
SS18-212ENST00000579061 TRAPPC13A5PLN9 417 aa13.04□□□□□ -0.32
SS18-212ENST00000579061 FAM220BPB1ANY3 271 aa13.04□□□□□ -0.32
SS18-212ENST00000579061 M0R082 166 aa13.04□□□□□ -0.32
SS18-212ENST00000579061 IFNA14P01570 189 aa13.04□□□□□ -0.32
SS18-212ENST00000579061 BGLAPP02818 100 aa13.04□□□□□ -0.32
SS18-212ENST00000579061 CD99P14209 185 aa13.04□□□□□ -0.32
SS18-212ENST00000579061 PAX1P15863 534 aa13.04□□□□□ -0.32
SS18-212ENST00000579061 PAX7P23759 505 aa13.04□□□□□ -0.32
SS18-212ENST00000579061 PTAFRP25105 342 aa13.04□□□□□ -0.32
SS18-212ENST00000579061 CRYBA2P53672 197 aa13.04□□□□□ -0.32
SS18-212ENST00000579061 NKX6-1P78426 367 aaPredicted RBP13.04□□□□□ -0.32
SS18-212ENST00000579061 KLHL17Q6TDP4 642 aa13.04□□□□□ -0.32
SS18-212ENST00000579061 PRSS57Q6UWY2 283 aa13.04□□□□□ -0.32
SS18-212ENST00000579061 ANKK1Q8NFD2 765 aa13.04□□□□□ -0.32
SS18-212ENST00000579061 OR4D11Q8NGI4 311 aa13.04□□□□□ -0.32
SS18-212ENST00000579061 LILRB1Q8NHL6 650 aaPredicted RBP13.04□□□□□ -0.32
SS18-212ENST00000579061 ZNF417Q8TAU3 575 aa13.04□□□□□ -0.32
SS18-212ENST00000579061 ADAMTS16Q8TE57 1224 aa13.04□□□□□ -0.32
SS18-212ENST00000579061 PROX1Q92786 737 aa13.04□□□□□ -0.32
SS18-212ENST00000579061 MPP4Q96JB8 637 aa13.04□□□□□ -0.32
SS18-212ENST00000579061 RADILQ96JH8 1075 aa13.04□□□□□ -0.32
SS18-212ENST00000579061 ZNF587Q96SQ5 575 aaPredicted RBP13.04□□□□□ -0.32
SS18-212ENST00000579061 SLC17A5Q9NRA2 495 aa13.04□□□□□ -0.32
SS18-212ENST00000579061 MRPL39Q9NYK5 338 aaKnown RBP13.04□□□□□ -0.32
SS18-212ENST00000579061 NPAP1Q9NZP6 1156 aa13.04□□□□□ -0.32
SS18-212ENST00000579061 USF3Q68DE3 2245 aa13.04□□□□□ -0.32
SS18-212ENST00000579061 ACANP16112 2415 aa13.03□□□□□ -0.32
SS18-212ENST00000579061 VPS13CQ709C8 3753 aa13.03□□□□□ -0.32
SS18-212ENST00000579061 CPSF4LA6NMK7 179 aaKnown RBP13.03□□□□□ -0.32
SS18-212ENST00000579061 ZNF587BE7ETH6 402 aa13.03□□□□□ -0.32
SS18-212ENST00000579061 CLOCKO15516 846 aa13.03□□□□□ -0.32
SS18-212ENST00000579061 AKAP8O43823 692 aaKnown RBP13.03□□□□□ -0.32
SS18-212ENST00000579061 KRT33AO76009 404 aa13.03□□□□□ -0.32
SS18-212ENST00000579061 ZNF432O94892 652 aa13.03□□□□□ -0.32
SS18-212ENST00000579061 MT-ATP6P00846 226 aa13.03□□□□□ -0.32
SS18-212ENST00000579061 COX4I1P13073 169 aa13.03□□□□□ -0.32
SS18-212ENST00000579061 SELENOPP49908 381 aa13.03□□□□□ -0.32
SS18-212ENST00000579061 CLDN17P56750 224 aa13.03□□□□□ -0.32
SS18-212ENST00000579061 LTBQ06643 244 aa13.03□□□□□ -0.32
SS18-212ENST00000579061 ZNF672Q499Z4 452 aaPredicted RBP13.03□□□□□ -0.32
SS18-212ENST00000579061 NIPAL3Q6P499 406 aa13.03□□□□□ -0.32
SS18-212ENST00000579061 TMEM108Q6UXF1 575 aa13.03□□□□□ -0.32
SS18-212ENST00000579061 SPATA21Q7Z572 469 aa13.03□□□□□ -0.32
SS18-212ENST00000579061 P3H2Q8IVL5 708 aa13.03□□□□□ -0.32
SS18-212ENST00000579061 KDM8Q8N371 416 aa13.03□□□□□ -0.32
SS18-212ENST00000579061 POU5F2Q8N7G0 328 aa13.03□□□□□ -0.32
SS18-212ENST00000579061 WDR31Q8NA23 367 aa13.03□□□□□ -0.32
SS18-212ENST00000579061 OR52N5Q8NH56 324 aa13.03□□□□□ -0.32
SS18-212ENST00000579061 VANGL1Q8TAA9 524 aaPredicted RBP13.03□□□□□ -0.32
SS18-212ENST00000579061 TMEM171Q8WVE6 324 aa13.03□□□□□ -0.32
SS18-212ENST00000579061 FBXW5Q969U6 566 aa13.03□□□□□ -0.32
SS18-212ENST00000579061 RCN3Q96D15 328 aa13.03□□□□□ -0.32
SS18-212ENST00000579061 ASPNQ9BXN1 380 aa13.03□□□□□ -0.32
SS18-212ENST00000579061 GSX2Q9BZM3 304 aa13.03□□□□□ -0.32
SS18-212ENST00000579061 SLC19A3Q9BZV2 496 aa13.03□□□□□ -0.32
SS18-212ENST00000579061 POLR2J2Q9GZM3 115 aaKnown RBP13.03□□□□□ -0.32
SS18-212ENST00000579061 POLR2J3Q9H1A7 115 aaKnown RBP13.03□□□□□ -0.32
SS18-212ENST00000579061 OBP2BQ9NPH6 170 aa13.03□□□□□ -0.32
SS18-212ENST00000579061 SEC14L4Q9UDX3 406 aa13.03□□□□□ -0.32
SS18-212ENST00000579061 MAGED1Q9Y5V3 778 aaPredicted RBP13.03□□□□□ -0.32
SS18-212ENST00000579061 FLNAP21333 2647 aaKnown RBP13.03□□□□□ -0.32
SS18-212ENST00000579061 MS4A18H0YCH9 400 aa13.02□□□□□ -0.33
SS18-212ENST00000579061 RPL36A-HNRNPH2H7BZ11 118 aa13.02□□□□□ -0.33
SS18-212ENST00000579061 LYPD3O95274 346 aa13.02□□□□□ -0.33
SS18-212ENST00000579061 WNT11O96014 354 aa13.02□□□□□ -0.33
SS18-212ENST00000579061 DANCRP0C864 163 aa13.02□□□□□ -0.33
SS18-212ENST00000579061 FOSL1P15407 271 aa13.02□□□□□ -0.33
SS18-212ENST00000579061 SH3BGRP55822 239 aaPredicted RBP13.02□□□□□ -0.33
SS18-212ENST00000579061 FOXD4Q12950 439 aaPredicted RBP13.02□□□□□ -0.33
SS18-212ENST00000579061 C1DQ13901 141 aaKnown RBP13.02□□□□□ -0.33
SS18-212ENST00000579061 MS4A18Q3C1V0 323 aa13.02□□□□□ -0.33
SS18-212ENST00000579061 TTC33Q6PID6 262 aaPredicted RBP13.02□□□□□ -0.33
SS18-212ENST00000579061 HACD2Q6Y1H2 254 aa13.02□□□□□ -0.33
SS18-212ENST00000579061 KRTAP1-3Q8IUG1 177 aa13.02□□□□□ -0.33
SS18-212ENST00000579061 RBM45Q8IUH3 476 aaKnown RBP13.02□□□□□ -0.33
SS18-212ENST00000579061 MICU2Q8IYU8 434 aa13.02□□□□□ -0.33
SS18-212ENST00000579061 OR2T12Q8NG77 320 aa13.02□□□□□ -0.33
SS18-212ENST00000579061 MAGEE2Q8TD90 523 aaPredicted RBP13.02□□□□□ -0.33
SS18-212ENST00000579061 HOPXQ9BPY8 73 aaPredicted RBP13.02□□□□□ -0.33
SS18-212ENST00000579061 ZNF426Q9BUY5 554 aa13.02□□□□□ -0.33
SS18-212ENST00000579061 NSRP1Q9H0G5 558 aaKnown RBP13.02□□□□□ -0.33
SS18-212ENST00000579061 CXorf56Q9H5V9 222 aa13.02□□□□□ -0.33
SS18-212ENST00000579061 EFCAB1Q9HAE3 211 aa13.02□□□□□ -0.33
SS18-212ENST00000579061 NOX1Q9Y5S8 564 aa13.02□□□□□ -0.33
SS18-212ENST00000579061 MTORP42345 2549 aa13.01□□□□□ -0.33
SS18-212ENST00000579061 ELOVL7A1L3X0 281 aa13.01□□□□□ -0.33
SS18-212ENST00000579061 SHISA9B4DS77 424 aa13.01□□□□□ -0.33
SS18-212ENST00000579061 NDUFAB1O14561 156 aa13.01□□□□□ -0.33
SS18-212ENST00000579061 ABCD4O14678 606 aa13.01□□□□□ -0.33
SS18-212ENST00000579061 TRAF3IP2O43734 574 aaPredicted RBP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms