RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 KLHL22Q53GT1 634 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 CLEC12AQ5QGZ9 265 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 SMARCD3Q6STE5 483 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 ZNF620Q6ZNG0 422 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 RTL4Q6ZR62 310 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 AHSA2Q719I0 299 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 HIST3H2AQ7L7L0 130 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 PRSS48Q7RTY5 328 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 SPARTQ8N0X7 666 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 IQCF1Q8N6M8 205 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 TCEANCQ8N8B7 351 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 OR5M9Q8NGP3 310 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 OR5M3Q8NGP4 307 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 PFN4Q8NHR9 129 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 TMEM163Q8TC26 289 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 ELP5Q8TE02 316 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 FCGR1BQ92637 280 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 HIST1H2ACQ93077 130 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 UBE2FQ969M7 185 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 C3orf49Q96BT1 292 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 IL4I1Q96RQ9 567 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 FOXC2Q99958 501 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 TMEM43Q9BTV4 400 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 IFT27Q9BW83 186 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 METTL7AQ9H8H3 244 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 LIN28AQ9H9Z2 209 aaKnown RBP9.17□□□□□ -0.94
SS18-207ENST00000577636 ZNF226Q9NYT6 803 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 CNOT2Q9NZN8 540 aaKnown RBP9.17□□□□□ -0.94
SS18-207ENST00000577636 ERVK-18Q9QC07 812 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 KCNN3Q9UGI6 736 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 WARS2Q9UGM6 360 aaKnown RBP9.17□□□□□ -0.94
SS18-207ENST00000577636 PSORS1C1Q9UIG5 152 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 ZNF223Q9UK11 482 aaPredicted RBP9.17□□□□□ -0.94
SS18-207ENST00000577636 KLF13Q9Y2Y9 288 aaPredicted RBP9.17□□□□□ -0.94
SS18-207ENST00000577636 YARS2Q9Y2Z4 477 aaKnown RBP9.17□□□□□ -0.94
SS18-207ENST00000577636 RIIAD1A6NNX1 92 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 NPIPA2E9PIF3 369 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 NPIPA3F8WFD2 350 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 KLRC4-KLRK1H3BQV0 150 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 GNB5O14775 395 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 LYPD3O95274 346 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 IGF2P01344 180 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 IFNGP01579 166 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 IGFBP1P08833 259 aaPredicted RBP9.16□□□□□ -0.94
SS18-207ENST00000577636 FBXO45P0C2W1 286 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 JUNBP17275 347 aaPredicted RBP9.16□□□□□ -0.94
SS18-207ENST00000577636 MAKP20794 623 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 PAICSP22234 425 aaKnown RBP9.16□□□□□ -0.94
SS18-207ENST00000577636 TACR3P29371 465 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 NOS3P29474 1203 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 GRK5P34947 590 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 SSR4P51571 173 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 POLR2HP52434 150 aaKnown RBP9.16□□□□□ -0.94
SS18-207ENST00000577636 FBXW4P57775 412 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 MLF1P58340 268 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 SLC35A2P78381 396 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 LSM11P83369 360 aaKnown RBP eCLIP9.16□□□□□ -0.94
SS18-207ENST00000577636 PLAURQ03405 335 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 TFF3Q07654 80 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 SMN1Q16637 294 aaKnown RBP9.16□□□□□ -0.94
SS18-207ENST00000577636 PGGHGQ32M88 737 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 ANKDD1AQ495B1 522 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 SLC25A30Q5SVS4 291 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 ZNF585AQ6P3V2 769 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 CBLN3Q6UW01 205 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 C5orf46Q6UWT4 87 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 LINC00114Q6XXX2 140 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 WDR88Q6ZMY6 472 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 ZNF227Q86WZ6 799 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 KIF18BQ86Y91 864 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 DUSP19Q8WTR2 217 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 APH1BQ8WW43 257 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 ASB15Q8WXK1 588 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 SAMD8Q96LT4 415 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 GPA33Q99795 319 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 ZNF426Q9BUY5 554 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 OR52D1Q9H346 318 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 TP63Q9H3D4 680 aaPredicted RBP9.16□□□□□ -0.94
SS18-207ENST00000577636 DSN1Q9H410 356 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 CHCHD3Q9NX63 227 aaKnown RBP9.16□□□□□ -0.94
SS18-207ENST00000577636 TAS2R10Q9NYW0 307 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 PPP4R1LQ9P1A2 415 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 RSL24D1Q9UHA3 163 aaKnown RBP9.16□□□□□ -0.94
SS18-207ENST00000577636 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.16□□□□□ -0.94
SS18-207ENST00000577636 ICAM5Q9UMF0 924 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 PLEKHA6Q9Y2H5 1048 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 ZNF337Q9Y3M9 751 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 PCDHGB1Q9Y5G3 927 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 MTORP42345 2549 aa9.16□□□□□ -0.94
SS18-207ENST00000577636 FAM221AA4D161 298 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 ZNF99A8MXY4 864 aaPredicted RBP9.15□□□□□ -0.94
SS18-207ENST00000577636 GMFGO60234 142 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 ENTPD6O75354 484 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 ITGA10O75578 1167 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 NDUFB2O95178 105 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 TP53P04637 393 aaPredicted RBP9.15□□□□□ -0.94
SS18-207ENST00000577636 CDK1P06493 297 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 PIPP12273 146 aaPredicted RBP9.15□□□□□ -0.94
SS18-207ENST00000577636 GABRB1P18505 474 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 FUT1P19526 365 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms