RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 SNX32Q86XE0 403 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 PTOV1Q86YD1 416 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 P3H2Q8IVL5 708 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 C10orf53Q8N6V4 93 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 POMGNT2Q8NAT1 580 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 SMYD1Q8NB12 490 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 OR9K2Q8NGE7 335 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 TMEM45BQ96B21 275 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 LRRC58Q96CX6 371 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 MCHR1Q99705 422 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 ASPNQ9BXN1 380 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 NSRP1Q9H0G5 558 aaKnown RBP7.15□□□□□ -1.26
VPS53-214ENST00000572607 CXXC4Q9H2H0 198 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 ALG2Q9H553 416 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 MALT1Q9UDY8 824 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 AP3M1Q9Y2T2 418 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 PCNX3Q9H6A9 2034 aa7.15□□□□□ -1.27
VPS53-214ENST00000572607 A0A0B4J2E0 115 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 A0A1B0GX12 115 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 OR5H1A6NKK0 313 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 M0R3H8 397 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 FBP2O00757 339 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 TPST1O60507 370 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 FMO6PO60774 539 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 NPIPB7O75200 414 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 LGI1O95970 557 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 NQO1P15559 274 aaKnown RBP7.14□□□□□ -1.27
VPS53-214ENST00000572607 ZNF43P17038 809 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 CD53P19397 219 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 HTR2AP28223 471 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 ABCA4P78363 2273 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 DMTNQ08495 405 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 GLIPR1L2Q4G1C9 344 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 RABL3Q5HYI8 236 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 NCMAPQ5T1S8 102 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 FAM69AQ5T7M9 428 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 NANOGP8Q6NSW7 305 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 NIPAL3Q6P499 406 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 ZNF613Q6PF04 617 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 KLHL24Q6TFL4 600 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 ARPINQ7Z6K5 226 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 TGIF2LYQ8IUE0 185 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 C17orf78Q8N4C9 275 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 ZNF433Q8N7K0 673 aaPredicted RBP7.14□□□□□ -1.27
VPS53-214ENST00000572607 RP9Q8TA86 221 aaKnown RBP7.14□□□□□ -1.27
VPS53-214ENST00000572607 VANGL1Q8TAA9 524 aaPredicted RBP7.14□□□□□ -1.27
VPS53-214ENST00000572607 TMEM171Q8WVE6 324 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 AKAP1Q92667 903 aaKnown RBP eCLIP7.14□□□□□ -1.27
VPS53-214ENST00000572607 PROX1Q92786 737 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 KTI12Q96EK9 354 aaPredicted RBP7.14□□□□□ -1.27
VPS53-214ENST00000572607 PIP5K1AQ99755 562 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 ARHGDIGQ99819 225 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 SLCO5A1Q9H2Y9 848 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 CXorf56Q9H5V9 222 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 NANOGQ9H9S0 305 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 DLL4Q9NR61 685 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 BAG5Q9UL15 447 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 B3GALT5Q9Y2C3 310 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 CORINQ9Y5Q5 1042 aa7.14□□□□□ -1.27
VPS53-214ENST00000572607 MAGED1Q9Y5V3 778 aaPredicted RBP7.14□□□□□ -1.27
VPS53-214ENST00000572607 FN1P02751 2386 aaKnown RBP7.13□□□□□ -1.27
VPS53-214ENST00000572607 ANK3Q12955 4377 aaKnown RBP7.13□□□□□ -1.27
VPS53-214ENST00000572607 A0A087WUJ7 227 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 A0A1W2PPR1 153 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 CPSF4LA6NMK7 179 aaKnown RBP7.13□□□□□ -1.27
VPS53-214ENST00000572607 FAM220BPB1ANY3 271 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 ZNF587BE7ETH6 402 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 NDUFAB1O14561 156 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 HS3ST1O14792 307 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 CHP2O43745 196 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 TMCC2O75069 709 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 SLC43A1O75387 559 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 OR6A2O95222 327 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 WNT11O96014 354 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 CD99P14209 185 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 CD247P20963 164 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 EDNRAP25101 427 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 MPGP29372 298 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 GRPRP30550 384 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 IFNA8P32881 189 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 CDH12P55289 794 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 NKX6-1P78426 367 aaPredicted RBP7.13□□□□□ -1.27
VPS53-214ENST00000572607 BSPH1Q075Z2 132 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 VEZF1Q14119 521 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 GABRA6Q16445 453 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 DUSP7Q16829 419 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 ENTPD8Q5MY95 495 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 C1QTNF12Q5T7M4 302 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 TSPO2Q5TGU0 170 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 C9orf135Q5VTT2 229 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 SHEQ5VZ18 495 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 TTC33Q6PID6 262 aaPredicted RBP7.13□□□□□ -1.27
VPS53-214ENST00000572607 TMEM108Q6UXF1 575 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 C8orf86Q6ZUL3 223 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 CREB3L2Q70SY1 520 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 H1FNTQ75WM6 255 aaPredicted RBP7.13□□□□□ -1.27
VPS53-214ENST00000572607 CCDC80Q76M96 950 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 UEVLDQ8IX04 471 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 LRRC75A-AS1Q8N1F1 130 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 DEPDC4Q8N2C3 294 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms