RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 TACR3P29371 465 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 RRM2P31350 389 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 PHBP35232 272 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 RPA3P35244 121 aaPredicted RBP5.47□□□□□ -1.53
VPS53-212ENST00000572259 RPS5P46782 204 aaKnown RBP5.47□□□□□ -1.53
VPS53-212ENST00000572259 NUDT6P53370 316 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 SEC61GP60059 68 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 PPP1CAP62136 330 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 GAGE2BQ13066 116 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 SLAQ13239 276 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 TGIF1Q15583 401 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 KCTD19Q17RG1 926 aaPredicted RBP5.47□□□□□ -1.53
VPS53-212ENST00000572259 GAGE2EQ4V326 116 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 AGKQ53H12 422 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 CMPK2Q5EBM0 449 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 ACSBG2Q5FVE4 666 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 XKR7Q5GH72 579 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 MLIPQ5VWP3 458 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 GGNBP1Q5YKI7 109 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 TMEM225Q6GV28 225 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 ZNF770Q6IQ21 691 aaPredicted RBP5.47□□□□□ -1.53
VPS53-212ENST00000572259 FAM166AQ6J272 317 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 GAGE2AQ6NT46 116 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 METTL2BQ6P1Q9 378 aaKnown RBP5.47□□□□□ -1.53
VPS53-212ENST00000572259 ZNF704Q6ZNC4 412 aaPredicted RBP5.47□□□□□ -1.53
VPS53-212ENST00000572259 COLCA1Q6ZS62 124 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 CCDC25Q86WR0 208 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 UEVLDQ8IX04 471 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 SCCPDHQ8NBX0 429 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 OR4K14Q8NGD5 310 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 HMGCLL1Q8TB92 370 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 SMPDL3AQ92484 453 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 PROX1Q92786 737 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 WBP1Q96G27 269 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 METTL2AQ96IZ6 378 aaKnown RBP5.47□□□□□ -1.53
VPS53-212ENST00000572259 ELMO2Q96JJ3 720 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 SLC45A3Q96JT2 553 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 GPR137Q96N19 417 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 GFI1Q99684 422 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 RHBGQ9H310 441 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 PARVBQ9HBI1 364 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 MAN2C1Q9NTJ4 1040 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 TXLNGQ9NUQ3 528 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 SLC2A8Q9NY64 477 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 GAGE2DQ9UEU5 116 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 BCAP29Q9UHQ4 241 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 MED13Q9UHV7 2174 aa5.47□□□□□ -1.53
VPS53-212ENST00000572259 TRAV24A0A0B4J272 114 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 A0A1W2PPK0 400 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 C9J4A7 227 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 C9JVG2 144 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 PRSS46E5RG02 174 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 UPK3AO75631 287 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 LIFP15018 202 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 ANPEPP15144 967 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 ARRB2P32121 409 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 STX2P32856 288 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 SPRP35270 261 aaPredicted RBP5.46□□□□□ -1.54
VPS53-212ENST00000572259 GPR4P46093 362 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 BDKRB1P46663 353 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 TNFSF10P50591 281 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 AP1S2P56377 157 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 GUCY2DQ02846 1103 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 NAB1Q13506 487 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 KEAP1Q14145 624 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 GRTP1Q5TC63 336 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 PWWP2BQ6NUJ5 590 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 ZNF549Q6P9A3 640 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 IL17RELQ6ZVW7 336 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 CTAGE3PQ8IX95 158 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 CCDC36Q8IYA8 594 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 CPNE9Q8IYJ1 553 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 MMGT1Q8N4V1 131 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 C2orf73Q8N5S3 287 aaPredicted RBP5.46□□□□□ -1.54
VPS53-212ENST00000572259 TBC1D19Q8N5T2 526 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 LMNTD1Q8N9Z9 388 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 TTC29Q8NA56 475 aaPredicted RBP5.46□□□□□ -1.54
VPS53-212ENST00000572259 FAM98AQ8NCA5 519 aaKnown RBP5.46□□□□□ -1.54
VPS53-212ENST00000572259 FAM76AQ8TAV0 307 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 FBXO25Q8TCJ0 367 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 CD200R1Q8TD46 325 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 EEF1AKMT1Q8WVE0 214 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 SPRYD4Q8WW59 207 aaPredicted RBP5.46□□□□□ -1.54
VPS53-212ENST00000572259 RAB1CQ92928 201 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 RERGQ96A58 199 aaPredicted RBP5.46□□□□□ -1.54
VPS53-212ENST00000572259 ZNF501Q96CX3 271 aaPredicted RBP5.46□□□□□ -1.54
VPS53-212ENST00000572259 TSNARE1Q96NA8 513 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 ZNF582Q96NG8 517 aaPredicted RBP5.46□□□□□ -1.54
VPS53-212ENST00000572259 TSSK2Q96PF2 358 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 NDNQ99608 321 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 LRRC1Q9BTT6 524 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 NLNQ9BYT8 704 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 SPRY4Q9C004 299 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 RHOJQ9H4E5 214 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 POPDC3Q9HBV1 291 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 MRPS30Q9NP92 439 aaKnown RBP5.46□□□□□ -1.54
VPS53-212ENST00000572259 LHX9Q9NQ69 397 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 SPHK1Q9NYA1 384 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 GALPQ9UBC7 116 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 ZNF490Q9ULM2 529 aaPredicted RBP5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms