RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 HGFACQ04756 655 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 NPRL3Q12980 569 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 SNTB2Q13425 540 aaKnown RBP9.54□□□□□ -0.88
VPS53-207ENST00000570510 TP53BP2Q13625 1128 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 GSTA3Q16772 222 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 C3orf36Q3SXR2 165 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 SPDYE7PQ495Y7 208 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 ELFN2Q5R3F8 820 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 EXOSC6Q5RKV6 272 aaKnown RBP9.54□□□□□ -0.88
VPS53-207ENST00000570510 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.54□□□□□ -0.88
VPS53-207ENST00000570510 PDZK1Q5T2W1 519 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 KRT80Q6KB66 452 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 MSANTD1Q6ZTZ1 278 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 TUBA1AQ71U36 451 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 ANKRD42Q8N9B4 389 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 RNF217Q8TC41 542 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 PMM1Q92871 262 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 PAIP2Q9BPZ3 127 aaKnown RBP9.54□□□□□ -0.88
VPS53-207ENST00000570510 SIKE1Q9BRV8 207 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 TMPRSS13Q9BYE2 586 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 C20orf27Q9GZN8 174 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 LAT2Q9GZY6 243 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 MMP27Q9H306 513 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 ZNF665Q9H7R5 613 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 CRLF2Q9HC73 371 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 G6PC2Q9NQR9 355 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 CTPS2Q9NRF8 586 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 ACER3Q9NUN7 267 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 PCDHGB4Q9UN71 923 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 PRSS51A0A1B0GVH4 220 aa9.53□□□□□ -0.88
VPS53-207ENST00000570510 TMEM129A0AVI4 362 aa9.53□□□□□ -0.88
VPS53-207ENST00000570510 DNAJC9-AS1A6NH13 148 aa9.53□□□□□ -0.88
VPS53-207ENST00000570510 ETV2O00321 342 aaPredicted RBP9.53□□□□□ -0.88
VPS53-207ENST00000570510 NR5A2O00482 541 aa9.53□□□□□ -0.88
VPS53-207ENST00000570510 KNG1P01042 644 aa9.53□□□□□ -0.88
VPS53-207ENST00000570510 HPXP02790 462 aa9.53□□□□□ -0.88
VPS53-207ENST00000570510 G6PDP11413 515 aa9.53□□□□□ -0.88
VPS53-207ENST00000570510 RYKP34925 604 aa9.53□□□□□ -0.88
VPS53-207ENST00000570510 RAD52P43351 418 aa9.53□□□□□ -0.88
VPS53-207ENST00000570510 CAPZA2P47755 286 aa9.53□□□□□ -0.88
VPS53-207ENST00000570510 GPR68Q15743 365 aa9.53□□□□□ -0.88
VPS53-207ENST00000570510 EIF3MQ7L2H7 374 aaKnown RBP9.53□□□□□ -0.88
VPS53-207ENST00000570510 GPAT4Q86UL3 456 aa9.53□□□□□ -0.88
VPS53-207ENST00000570510 IL17RDQ8NFM7 739 aa9.53□□□□□ -0.88
VPS53-207ENST00000570510 OR1K1Q8NGR3 316 aa9.53□□□□□ -0.88
VPS53-207ENST00000570510 MIPOL1Q8TD10 442 aa9.53□□□□□ -0.88
VPS53-207ENST00000570510 ZNF524Q96C55 264 aa9.53□□□□□ -0.88
VPS53-207ENST00000570510 DDIT4LQ96D03 193 aa9.53□□□□□ -0.88
VPS53-207ENST00000570510 ZNF317Q96PQ6 595 aaPredicted RBP9.53□□□□□ -0.88
VPS53-207ENST00000570510 DUSP26Q9BV47 211 aa9.53□□□□□ -0.88
VPS53-207ENST00000570510 ACTRT3Q9BYD9 372 aa9.53□□□□□ -0.88
VPS53-207ENST00000570510 DPY30Q9C005 99 aa9.53□□□□□ -0.88
VPS53-207ENST00000570510 OR11A1Q9GZK7 315 aa9.53□□□□□ -0.88
VPS53-207ENST00000570510 RACGAP1Q9H0H5 632 aa9.53□□□□□ -0.88
VPS53-207ENST00000570510 BAIAP2L1Q9UHR4 511 aa9.53□□□□□ -0.88
VPS53-207ENST00000570510 TRAPPC4Q9Y296 219 aa9.53□□□□□ -0.88
VPS53-207ENST00000570510 PRKDCP78527 4128 aaKnown RBP9.52□□□□□ -0.88
VPS53-207ENST00000570510 TIMM23O14925 209 aa9.52□□□□□ -0.89
VPS53-207ENST00000570510 IL6P05231 212 aa9.52□□□□□ -0.89
VPS53-207ENST00000570510 GSNP06396 782 aa9.52□□□□□ -0.89
VPS53-207ENST00000570510 LAMP1P11279 417 aa9.52□□□□□ -0.89
VPS53-207ENST00000570510 ANXA11P50995 505 aaKnown RBP9.52□□□□□ -0.89
VPS53-207ENST00000570510 POU3F1Q03052 451 aaPredicted RBP9.52□□□□□ -0.89
VPS53-207ENST00000570510 MVKQ03426 396 aa9.52□□□□□ -0.89
VPS53-207ENST00000570510 SKP2Q13309 424 aa9.52□□□□□ -0.89
VPS53-207ENST00000570510 PTGR1Q14914 329 aa9.52□□□□□ -0.89
VPS53-207ENST00000570510 SLC17A1Q14916 467 aa9.52□□□□□ -0.89
VPS53-207ENST00000570510 GLIPR1L2Q4G1C9 344 aa9.52□□□□□ -0.89
VPS53-207ENST00000570510 ARMCX4Q5H9R4 360 aa9.52□□□□□ -0.89
VPS53-207ENST00000570510 GKAP1Q5VSY0 366 aaPredicted RBP9.52□□□□□ -0.89
VPS53-207ENST00000570510 LEG1Q6P5S2 330 aa9.52□□□□□ -0.89
VPS53-207ENST00000570510 RETREG3Q86VR2 466 aa9.52□□□□□ -0.89
VPS53-207ENST00000570510 ARFGAP2Q8N6H7 521 aa9.52□□□□□ -0.89
VPS53-207ENST00000570510 TRIML2Q8N7C3 387 aa9.52□□□□□ -0.89
VPS53-207ENST00000570510 SYT14Q8NB59 555 aa9.52□□□□□ -0.89
VPS53-207ENST00000570510 AGR3Q8TD06 166 aa9.52□□□□□ -0.89
VPS53-207ENST00000570510 LRRC8CQ8TDW0 803 aa9.52□□□□□ -0.89
VPS53-207ENST00000570510 RAB8BQ92930 207 aa9.52□□□□□ -0.89
VPS53-207ENST00000570510 FAM120BQ96EK7 910 aaKnown RBP9.52□□□□□ -0.89
VPS53-207ENST00000570510 ZBTB18Q99592 522 aa9.52□□□□□ -0.89
VPS53-207ENST00000570510 NUF2Q9BZD4 464 aa9.52□□□□□ -0.89
VPS53-207ENST00000570510 POLE3Q9NRF9 147 aa9.52□□□□□ -0.89
VPS53-207ENST00000570510 ZIM2Q9NZV7 527 aa9.52□□□□□ -0.89
VPS53-207ENST00000570510 TESQ9UGI8 421 aaKnown RBP9.52□□□□□ -0.89
VPS53-207ENST00000570510 BTNL2Q9UIR0 455 aa9.52□□□□□ -0.89
VPS53-207ENST00000570510 ARPC4-TTLL3A0A0A6YYG9 625 aa9.51□□□□□ -0.89
VPS53-207ENST00000570510 IGHV2OR16-5A0A0B4J2B6 119 aa9.51□□□□□ -0.89
VPS53-207ENST00000570510 E9PBE3 544 aa9.51□□□□□ -0.89
VPS53-207ENST00000570510 SDHDO14521 159 aa9.51□□□□□ -0.89
VPS53-207ENST00000570510 HOXB1P14653 301 aaPredicted RBP9.51□□□□□ -0.89
VPS53-207ENST00000570510 CBR1P16152 277 aa9.51□□□□□ -0.89
VPS53-207ENST00000570510 EFNA1P20827 205 aaPredicted RBP9.51□□□□□ -0.89
VPS53-207ENST00000570510 MDKP21741 143 aaPredicted RBP9.51□□□□□ -0.89
VPS53-207ENST00000570510 ARR3P36575 388 aa9.51□□□□□ -0.89
VPS53-207ENST00000570510 ALDH3B1P43353 468 aa9.51□□□□□ -0.89
VPS53-207ENST00000570510 CCT3P49368 545 aaKnown RBP9.51□□□□□ -0.89
VPS53-207ENST00000570510 EVX1P49640 407 aa9.51□□□□□ -0.89
VPS53-207ENST00000570510 PDCD4Q53EL6 469 aaKnown RBP9.51□□□□□ -0.89
VPS53-207ENST00000570510 ZNF385BQ569K4 471 aa9.51□□□□□ -0.89
VPS53-207ENST00000570510 AVPI1Q5T686 147 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms