RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 MS4A18Q3C1V0 323 aa13.22□□□□□ -0.29
VPS39-210ENST00000568357 NCMAPQ5T1S8 102 aa13.22□□□□□ -0.29
VPS39-210ENST00000568357 SWT1Q5T5J6 900 aaKnown RBP13.22□□□□□ -0.29
VPS39-210ENST00000568357 C8orf82Q6P1X6 216 aaPredicted RBP13.22□□□□□ -0.29
VPS39-210ENST00000568357 ZNF704Q6ZNC4 412 aaPredicted RBP13.22□□□□□ -0.29
VPS39-210ENST00000568357 H1FNTQ75WM6 255 aaPredicted RBP13.22□□□□□ -0.29
VPS39-210ENST00000568357 CPLX4Q7Z7G2 160 aa13.22□□□□□ -0.29
VPS39-210ENST00000568357 P2RY8Q86VZ1 359 aa13.22□□□□□ -0.29
VPS39-210ENST00000568357 OR2T12Q8NG77 320 aa13.22□□□□□ -0.29
VPS39-210ENST00000568357 OR6S1Q8NH40 331 aa13.22□□□□□ -0.29
VPS39-210ENST00000568357 LILRB1Q8NHL6 650 aaPredicted RBP13.22□□□□□ -0.29
VPS39-210ENST00000568357 RASSF5Q8WWW0 418 aa13.22□□□□□ -0.29
VPS39-210ENST00000568357 SLC41A3Q96GZ6 507 aa13.22□□□□□ -0.29
VPS39-210ENST00000568357 OXGR1Q96P68 337 aa13.22□□□□□ -0.29
VPS39-210ENST00000568357 MOGAT1Q96PD6 335 aa13.22□□□□□ -0.29
VPS39-210ENST00000568357 ALPK1Q96QP1 1244 aa13.22□□□□□ -0.29
VPS39-210ENST00000568357 TMEM43Q9BTV4 400 aa13.22□□□□□ -0.29
VPS39-210ENST00000568357 PCDHAC1Q9H158 963 aa13.22□□□□□ -0.29
VPS39-210ENST00000568357 EFCAB1Q9HAE3 211 aa13.22□□□□□ -0.29
VPS39-210ENST00000568357 DLL4Q9NR61 685 aa13.22□□□□□ -0.29
VPS39-210ENST00000568357 B3GALT5Q9Y2C3 310 aa13.22□□□□□ -0.29
VPS39-210ENST00000568357 SH3GLB1Q9Y371 365 aa13.22□□□□□ -0.29
VPS39-210ENST00000568357 VPS13CQ709C8 3753 aa13.21□□□□□ -0.29
VPS39-210ENST00000568357 LOC102725191A0A1B0GVB3 256 aa13.21□□□□□ -0.29
VPS39-210ENST00000568357 A0A1W2PR80 420 aa13.21□□□□□ -0.29
VPS39-210ENST00000568357 ELOVL7A1L3X0 281 aa13.21□□□□□ -0.29
VPS39-210ENST00000568357 CHP2O43745 196 aa13.21□□□□□ -0.29
VPS39-210ENST00000568357 HPRP00739 348 aa13.21□□□□□ -0.29
VPS39-210ENST00000568357 GTF2E2P29084 291 aaKnown RBP13.21□□□□□ -0.29
VPS39-210ENST00000568357 KDELR2P33947 212 aa13.21□□□□□ -0.29
VPS39-210ENST00000568357 GNGT1P63211 74 aa13.21□□□□□ -0.29
VPS39-210ENST00000568357 LIPEQ05469 1076 aa13.21□□□□□ -0.29
VPS39-210ENST00000568357 NIPAL3Q6P499 406 aa13.21□□□□□ -0.29
VPS39-210ENST00000568357 CARM1Q86X55 608 aa13.21□□□□□ -0.29
VPS39-210ENST00000568357 MICU2Q8IYU8 434 aa13.21□□□□□ -0.29
VPS39-210ENST00000568357 WDR31Q8NA23 367 aa13.21□□□□□ -0.29
VPS39-210ENST00000568357 OR52N5Q8NH56 324 aa13.21□□□□□ -0.29
VPS39-210ENST00000568357 PROX1Q92786 737 aa13.21□□□□□ -0.29
VPS39-210ENST00000568357 MUCL1Q96DR8 90 aa13.21□□□□□ -0.29
VPS39-210ENST00000568357 EPYCQ99645 322 aa13.21□□□□□ -0.29
VPS39-210ENST00000568357 HOPXQ9BPY8 73 aaPredicted RBP13.21□□□□□ -0.29
VPS39-210ENST00000568357 AMBRA1Q9C0C7 1298 aa13.21□□□□□ -0.29
VPS39-210ENST00000568357 SLCO5A1Q9H2Y9 848 aa13.21□□□□□ -0.29
VPS39-210ENST00000568357 NGBQ9NPG2 151 aa13.21□□□□□ -0.29
VPS39-210ENST00000568357 NPAP1Q9NZP6 1156 aa13.21□□□□□ -0.29
VPS39-210ENST00000568357 SLC25A15Q9Y619 301 aa13.21□□□□□ -0.29
VPS39-210ENST00000568357 PRR14LQ5THK1 2151 aa13.2□□□□□ -0.3
VPS39-210ENST00000568357 TRAPPC13A5PLN9 417 aa13.2□□□□□ -0.3
VPS39-210ENST00000568357 NME4O00746 187 aa13.2□□□□□ -0.3
VPS39-210ENST00000568357 SHOX2O60902 331 aaPredicted RBP13.2□□□□□ -0.3
VPS39-210ENST00000568357 UPK3AO75631 287 aa13.2□□□□□ -0.3
VPS39-210ENST00000568357 ZNF432O94892 652 aa13.2□□□□□ -0.3
VPS39-210ENST00000568357 HLA-DOBP13765 273 aa13.2□□□□□ -0.3
VPS39-210ENST00000568357 ZNF43P17038 809 aa13.2□□□□□ -0.3
VPS39-210ENST00000568357 MPGP29372 298 aa13.2□□□□□ -0.3
VPS39-210ENST00000568357 OR1E2P47887 323 aa13.2□□□□□ -0.3
VPS39-210ENST00000568357 CLDN17P56750 224 aa13.2□□□□□ -0.3
VPS39-210ENST00000568357 BSPH1Q075Z2 132 aa13.2□□□□□ -0.3
VPS39-210ENST00000568357 CYBRD1Q53TN4 286 aa13.2□□□□□ -0.3
VPS39-210ENST00000568357 OR7E24Q6IFN5 339 aa13.2□□□□□ -0.3
VPS39-210ENST00000568357 NHLRC1Q6VVB1 395 aa13.2□□□□□ -0.3
VPS39-210ENST00000568357 HACD2Q6Y1H2 254 aa13.2□□□□□ -0.3
VPS39-210ENST00000568357 Q71RC1 249 aaPredicted RBP13.2□□□□□ -0.3
VPS39-210ENST00000568357 LINGO2Q7L985 606 aa13.2□□□□□ -0.3
VPS39-210ENST00000568357 C10orf53Q8N6V4 93 aa13.2□□□□□ -0.3
VPS39-210ENST00000568357 POMGNT2Q8NAT1 580 aa13.2□□□□□ -0.3
VPS39-210ENST00000568357 AKAP1Q92667 903 aaKnown RBP eCLIP13.2□□□□□ -0.3
VPS39-210ENST00000568357 NEUROG1Q92886 237 aa13.2□□□□□ -0.3
VPS39-210ENST00000568357 PRSS27Q9BQR3 290 aa13.2□□□□□ -0.3
VPS39-210ENST00000568357 ESRP2Q9H6T0 727 aaKnown RBP13.2□□□□□ -0.3
VPS39-210ENST00000568357 BAG5Q9UL15 447 aa13.2□□□□□ -0.3
VPS39-210ENST00000568357 SLC7A7Q9UM01 511 aa13.2□□□□□ -0.3
VPS39-210ENST00000568357 CLOCKO15516 846 aa13.19□□□□□ -0.3
VPS39-210ENST00000568357 IFNA14P01570 189 aa13.19□□□□□ -0.3
VPS39-210ENST00000568357 CD3EP07766 207 aa13.19□□□□□ -0.3
VPS39-210ENST00000568357 CDH2P19022 906 aaPredicted RBP13.19□□□□□ -0.3
VPS39-210ENST00000568357 NUDT2P50583 147 aa13.19□□□□□ -0.3
VPS39-210ENST00000568357 SLC7A2P52569 658 aa13.19□□□□□ -0.3
VPS39-210ENST00000568357 C1DQ13901 141 aaKnown RBP13.19□□□□□ -0.3
VPS39-210ENST00000568357 MFSD13AQ14CX5 517 aa13.19□□□□□ -0.3
VPS39-210ENST00000568357 LRRC23Q53EV4 343 aaPredicted RBP13.19□□□□□ -0.3
VPS39-210ENST00000568357 C20orf204Q6ZNR8 217 aa13.19□□□□□ -0.3
VPS39-210ENST00000568357 ARPINQ7Z6K5 226 aa13.19□□□□□ -0.3
VPS39-210ENST00000568357 PIGWQ7Z7B1 504 aa13.19□□□□□ -0.3
VPS39-210ENST00000568357 SCAIQ8N9R8 606 aa13.19□□□□□ -0.3
VPS39-210ENST00000568357 ADPRHL1Q8NDY3 354 aa13.19□□□□□ -0.3
VPS39-210ENST00000568357 IGFBPL1Q8WX77 278 aa13.19□□□□□ -0.3
VPS39-210ENST00000568357 PIGTQ969N2 578 aa13.19□□□□□ -0.3
VPS39-210ENST00000568357 CMTM5Q96DZ9 223 aa13.19□□□□□ -0.3
VPS39-210ENST00000568357 TPD52L3Q96J77 140 aa13.19□□□□□ -0.3
VPS39-210ENST00000568357 ZNF426Q9BUY5 554 aa13.19□□□□□ -0.3
VPS39-210ENST00000568357 C1QTNF6Q9BXI9 259 aa13.19□□□□□ -0.3
VPS39-210ENST00000568357 NSRP1Q9H0G5 558 aaKnown RBP13.19□□□□□ -0.3
VPS39-210ENST00000568357 BEX4Q9NWD9 120 aaPredicted RBP13.19□□□□□ -0.3
VPS39-210ENST00000568357 MRPL39Q9NYK5 338 aaKnown RBP13.19□□□□□ -0.3
VPS39-210ENST00000568357 AP3M1Q9Y2T2 418 aa13.19□□□□□ -0.3
VPS39-210ENST00000568357 RNF115Q9Y4L5 304 aa13.19□□□□□ -0.3
VPS39-210ENST00000568357 CORINQ9Y5Q5 1042 aa13.19□□□□□ -0.3
VPS39-210ENST00000568357 PLPP3O14495 311 aa13.18□□□□□ -0.3
VPS39-210ENST00000568357 HS3ST1O14792 307 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms