RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 C6orf89Q6UWU4 347 aa14□□□□□ -0.17
CLN3-229ENST00000567963 FUNDC1Q8IVP5 155 aa14□□□□□ -0.17
CLN3-229ENST00000567963 GOLGA6L1Q8N7Z2 621 aa14□□□□□ -0.17
CLN3-229ENST00000567963 LSMEM1Q8N8F7 131 aa14□□□□□ -0.17
CLN3-229ENST00000567963 KATNB1Q9BVA0 655 aa14□□□□□ -0.17
CLN3-229ENST00000567963 C12orf10Q9HB07 376 aa14□□□□□ -0.17
CLN3-229ENST00000567963 SLC25A37Q9NYZ2 338 aa14□□□□□ -0.17
CLN3-229ENST00000567963 SLAMF8Q9P0V8 285 aa14□□□□□ -0.17
CLN3-229ENST00000567963 CRNNQ9UBG3 495 aaPredicted RBP14□□□□□ -0.17
CLN3-229ENST00000567963 SEC14L4Q9UDX3 406 aa14□□□□□ -0.17
CLN3-229ENST00000567963 A0A096LPE4 126 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 A0A1W2PPZ6 126 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 C5orf58C9J3I9 102 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 RPL36A-HNRNPH2H7BZ11 118 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 OR2T1O43869 369 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 FZD7O75084 574 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 TGDSO95455 350 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 CRYAAP02489 173 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 HOXB1P14653 301 aaPredicted RBP13.99□□□□□ -0.17
CLN3-229ENST00000567963 GTF2E2P29084 291 aaKnown RBP13.99□□□□□ -0.17
CLN3-229ENST00000567963 PRKAR1BP31321 381 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 CLDN17P56750 224 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 C3orf36Q3SXR2 165 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 BEND6Q5SZJ8 279 aaPredicted RBP13.99□□□□□ -0.17
CLN3-229ENST00000567963 LRIF1Q5T3J3 769 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 MSRB3Q8IXL7 192 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 ANKK1Q8NFD2 765 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 TAAR8Q969N4 342 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 C7orf26Q96N11 449 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 OXGR1Q96P68 337 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 KCNS3Q9BQ31 491 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 NELFAQ9H3P2 528 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 TCF7L2Q9NQB0 619 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 CA10Q9NS85 328 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 B3GAT1Q9P2W7 334 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 RPS6KB2Q9UBS0 482 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 IGLV1-44P01699 117 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 ARAFP10398 606 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 SERPINF1P36955 418 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 SH3BGRP55822 239 aaPredicted RBP13.99□□□□□ -0.17
CLN3-229ENST00000567963 STX1BP61266 288 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 TUBA1BP68363 451 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 TUBA4AP68366 448 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 ROR2Q01974 943 aaKnown RBP13.99□□□□□ -0.17
CLN3-229ENST00000567963 NAAAQ02083 359 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 FAM69AQ5T7M9 428 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 BLOC1S3Q6QNY0 202 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 C5orf46Q6UWT4 87 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 TUBA1AQ71U36 451 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 C10orf111Q8N326 155 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 FAM169BQ8N8A8 192 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 NFKBIDQ8NI38 313 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 SLC52A3Q9NQ40 469 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 TMEM160Q9NX00 188 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 CCDC167Q9P0B6 97 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 RCE1Q9Y256 329 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 GMEB1Q9Y692 573 aa13.99□□□□□ -0.17
CLN3-229ENST00000567963 A0A1B0GWA3 101 aa13.98□□□□□ -0.17
CLN3-229ENST00000567963 AIM2O14862 343 aa13.98□□□□□ -0.17
CLN3-229ENST00000567963 POLR3GO15318 223 aaPredicted RBP13.98□□□□□ -0.17
CLN3-229ENST00000567963 ERLIN1O75477 346 aa13.98□□□□□ -0.17
CLN3-229ENST00000567963 IGKV3-15P01624 115 aa13.98□□□□□ -0.17
CLN3-229ENST00000567963 CECR9P0C854 216 aa13.98□□□□□ -0.17
CLN3-229ENST00000567963 USF1P22415 310 aaPredicted RBP13.98□□□□□ -0.17
CLN3-229ENST00000567963 HTR2AP28223 471 aa13.98□□□□□ -0.17
CLN3-229ENST00000567963 IDH3AP50213 366 aa13.98□□□□□ -0.17
CLN3-229ENST00000567963 SNRPD2P62316 118 aaKnown RBP13.98□□□□□ -0.17
CLN3-229ENST00000567963 PAGE3Q5JUK9 113 aa13.98□□□□□ -0.17
CLN3-229ENST00000567963 CYB5R2Q6BCY4 276 aa13.98□□□□□ -0.17
CLN3-229ENST00000567963 REEP3Q6NUK4 255 aa13.98□□□□□ -0.17
CLN3-229ENST00000567963 NET1Q7Z628 596 aaPredicted RBP13.98□□□□□ -0.17
CLN3-229ENST00000567963 COMTD1Q86VU5 262 aa13.98□□□□□ -0.17
CLN3-229ENST00000567963 DNAJA4Q8WW22 397 aaPredicted RBP13.98□□□□□ -0.17
CLN3-229ENST00000567963 SLC38A4Q969I6 547 aa13.98□□□□□ -0.17
CLN3-229ENST00000567963 SPDL1Q96EA4 605 aa13.98□□□□□ -0.17
CLN3-229ENST00000567963 SORCS2Q96PQ0 1159 aa13.98□□□□□ -0.17
CLN3-229ENST00000567963 KCNK17Q96T54 332 aa13.98□□□□□ -0.17
CLN3-229ENST00000567963 EBF4Q9BQW3 602 aa13.98□□□□□ -0.17
CLN3-229ENST00000567963 MOV10Q9HCE1 1003 aaKnown RBP13.98□□□□□ -0.17
CLN3-229ENST00000567963 VAPAQ9P0L0 249 aa13.98□□□□□ -0.17
CLN3-229ENST00000567963 CDC42EP3Q9UKI2 254 aa13.98□□□□□ -0.17
CLN3-229ENST00000567963 FKBP7Q9Y680 259 aa13.98□□□□□ -0.17
CLN3-229ENST00000567963 IGKV1D-42A0A075B6H8 117 aa13.97□□□□□ -0.17
CLN3-229ENST00000567963 LOC102725191A0A1B0GVB3 256 aa13.97□□□□□ -0.17
CLN3-229ENST00000567963 VWC2LB2RUY7 222 aa13.97□□□□□ -0.17
CLN3-229ENST00000567963 B9A039 149 aa13.97□□□□□ -0.17
CLN3-229ENST00000567963 M0R082 166 aa13.97□□□□□ -0.17
CLN3-229ENST00000567963 TPST1O60507 370 aa13.97□□□□□ -0.17
CLN3-229ENST00000567963 SLC43A1O75387 559 aa13.97□□□□□ -0.17
CLN3-229ENST00000567963 OR4A8P0C604 315 aa13.97□□□□□ -0.17
CLN3-229ENST00000567963 IGHV4-31P0DP07 118 aa13.97□□□□□ -0.17
CLN3-229ENST00000567963 CALCRP30988 508 aa13.97□□□□□ -0.17
CLN3-229ENST00000567963 PDLIM4P50479 330 aa13.97□□□□□ -0.17
CLN3-229ENST00000567963 LSM11P83369 360 aaKnown RBP eCLIP13.97□□□□□ -0.17
CLN3-229ENST00000567963 ARF1P84077 181 aaKnown RBP13.97□□□□□ -0.17
CLN3-229ENST00000567963 CDK6Q00534 326 aa13.97□□□□□ -0.17
CLN3-229ENST00000567963 ADIPOQQ15848 244 aa13.97□□□□□ -0.17
CLN3-229ENST00000567963 GLIPR1L2Q4G1C9 344 aa13.97□□□□□ -0.17
CLN3-229ENST00000567963 ALG10BQ5I7T1 473 aa13.97□□□□□ -0.17
CLN3-229ENST00000567963 GCNT6Q5T4J0 391 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms