RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 GSTT2P0CG29 244 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 GSTT2BP0CG30 244 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 CALCBP10092 127 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 PSKH1P11801 424 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 GP1BBP13224 206 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 ARSBP15848 533 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 GLB1P16278 677 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 ATF1P18846 271 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 CFPP27918 469 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 TACR3P29371 465 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 HOXD12P35452 270 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 CDKN2AP42771 156 aaKnown RBP5.69□□□□□ -1.5
CLN3-223ENST00000566472 PPM1FP49593 454 aaPredicted RBP5.69□□□□□ -1.5
CLN3-223ENST00000566472 P2RX1P51575 399 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 CCR4P51679 360 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 POLR2HP52434 150 aaKnown RBP5.69□□□□□ -1.5
CLN3-223ENST00000566472 SUMO3P55854 103 aaPredicted RBP5.69□□□□□ -1.5
CLN3-223ENST00000566472 DLX5P56178 289 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 OR10A3P58181 314 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 RRAS2P62070 204 aaPredicted RBP5.69□□□□□ -1.5
CLN3-223ENST00000566472 IFITM2Q01629 132 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 EGR4Q05215 589 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 RIPPLY1Q0D2K3 151 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 PLCXD2Q0VAA5 305 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 SRSF5Q13243 272 aaKnown RBP5.69□□□□□ -1.5
CLN3-223ENST00000566472 DYRK1AQ13627 763 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 CBFBQ13951 182 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 EFR3AQ14156 821 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 GPR176Q14439 515 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 CDK10Q15131 360 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 SMAD2Q15796 467 aaKnown RBP5.69□□□□□ -1.5
CLN3-223ENST00000566472 SGCBQ16585 318 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 SLC25A35Q3KQZ1 300 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 PLA1AQ53H76 456 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 CCDC92Q53HC0 331 aaPredicted RBP5.69□□□□□ -1.5
CLN3-223ENST00000566472 CEP78Q5JTW2 689 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 WDR45BQ5MNZ6 344 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 FAM27D1Q5T7N8 215 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 ARHGAP40Q5TG30 622 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 EEF1A1P5Q5VTE0 462 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 FDX2Q6P4F2 183 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 WDR74Q6RFH5 385 aaPredicted RBP5.69□□□□□ -1.5
CLN3-223ENST00000566472 RPTNQ6XPR3 784 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 SLC29A4Q7RTT9 530 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 MAMDC2Q7Z304 686 aaPredicted RBP5.69□□□□□ -1.5
CLN3-223ENST00000566472 CDC20BQ86Y33 519 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 TIGD4Q8IY51 512 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 GPR135Q8IZ08 494 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 SPEM1Q8N4L4 309 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 RFLNBQ8N5W9 214 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 FAM160A2Q8N612 972 aaPredicted RBP5.69□□□□□ -1.5
CLN3-223ENST00000566472 METTL27Q8N6F8 245 aaPredicted RBP5.69□□□□□ -1.5
CLN3-223ENST00000566472 C10orf53Q8N6V4 93 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 OR1N1Q8NGS0 311 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 OR6K6Q8NGW6 343 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 OR1L3Q8NH93 324 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 STK35Q8TDR2 534 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 CAPSLQ8WWF8 208 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 DEDD2Q8WXF8 326 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 ASB17Q8WXJ9 295 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 DNASE2BQ8WZ79 361 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 AKAP1Q92667 903 aaKnown RBP eCLIP5.69□□□□□ -1.5
CLN3-223ENST00000566472 TSLPQ969D9 159 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 UPRTQ96BW1 309 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 RASD2Q96D21 266 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 ARSGQ96EG1 525 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 RNF31Q96EP0 1072 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 Q96M85 177 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 KLHL15Q96M94 604 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 LPAR4Q99677 370 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 IER2Q9BTL4 223 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 NUDT9Q9BW91 350 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 OR8D2Q9GZM6 311 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 TGIF2Q9GZN2 237 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 WWTR1Q9GZV5 400 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 ABCG5Q9H222 651 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 TP63Q9H3D4 680 aaPredicted RBP5.69□□□□□ -1.5
CLN3-223ENST00000566472 DPAGT1Q9H3H5 408 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 ZNF768Q9H5H4 540 aaKnown RBP5.69□□□□□ -1.5
CLN3-223ENST00000566472 WDR76Q9H967 626 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 ACOXLQ9NUZ1 547 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 C2orf42Q9NWW7 574 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 MRPL39Q9NYK5 338 aaKnown RBP5.69□□□□□ -1.5
CLN3-223ENST00000566472 PTTG3PQ9NZH4 202 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 NLKQ9UBE8 527 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 GRHPRQ9UBQ7 328 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 WNT16Q9UBV4 365 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 NUFIP1Q9UHK0 495 aaKnown RBP5.69□□□□□ -1.5
CLN3-223ENST00000566472 CA14Q9ULX7 337 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 PCDHGA9Q9Y5G4 932 aaKnown RBP5.69□□□□□ -1.5
CLN3-223ENST00000566472 ETV7Q9Y603 341 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 FKBP7Q9Y680 259 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 IGLV3-12A0A075B6K2 115 aa5.68□□□□□ -1.5
CLN3-223ENST00000566472 OR6C70A6NIJ9 312 aa5.68□□□□□ -1.5
CLN3-223ENST00000566472 NPIPB13A6NJU9 1138 aa5.68□□□□□ -1.5
CLN3-223ENST00000566472 TMEM212A6NML5 194 aa5.68□□□□□ -1.5
CLN3-223ENST00000566472 IFITM5A6NNB3 132 aa5.68□□□□□ -1.5
CLN3-223ENST00000566472 CENPBD1B2RD01 187 aa5.68□□□□□ -1.5
CLN3-223ENST00000566472 NPIPB4C9JG80 1138 aa5.68□□□□□ -1.5
CLN3-223ENST00000566472 BLOC1S5-TXNDC5H3BN57 136 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms