RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 TRAPPC4Q9Y296 219 aa27.46■■□□□ 1.99
CTCF-203ENST00000566078 RNF13O43567 381 aa27.45■■□□□ 1.99
CTCF-203ENST00000566078 XPNPEP2O43895 674 aa27.45■■□□□ 1.99
CTCF-203ENST00000566078 AKR7A3O95154 331 aa27.45■■□□□ 1.99
CTCF-203ENST00000566078 PMS2P2O95744 297 aa27.45■■□□□ 1.99
CTCF-203ENST00000566078 CD14P08571 375 aa27.45■■□□□ 1.99
CTCF-203ENST00000566078 AHCYP23526 432 aa27.45■■□□□ 1.99
CTCF-203ENST00000566078 KCTD21Q4G0X4 260 aa27.45■■□□□ 1.99
CTCF-203ENST00000566078 TMPPEQ6ZT21 453 aa27.45■■□□□ 1.99
CTCF-203ENST00000566078 H1FNTQ75WM6 255 aaPredicted RBP27.45■■□□□ 1.99
CTCF-203ENST00000566078 ZCCHC14Q8WYQ9 949 aaKnown RBP27.45■■□□□ 1.99
CTCF-203ENST00000566078 CMC2Q9NRP2 79 aa27.45■■□□□ 1.99
CTCF-203ENST00000566078 DNAJC13O75165 2243 aa27.45■■□□□ 1.99
CTCF-203ENST00000566078 A0A087WV48 116 aa27.45■■□□□ 1.98
CTCF-203ENST00000566078 LINC01387J3KSC0 135 aa27.45■■□□□ 1.98
CTCF-203ENST00000566078 TAF4O00268 1085 aa27.45■■□□□ 1.98
CTCF-203ENST00000566078 FAM20BO75063 409 aa27.45■■□□□ 1.98
CTCF-203ENST00000566078 CRHBPP24387 322 aa27.45■■□□□ 1.98
CTCF-203ENST00000566078 NUDT6P53370 316 aa27.45■■□□□ 1.98
CTCF-203ENST00000566078 CXCR4P61073 352 aa27.45■■□□□ 1.98
CTCF-203ENST00000566078 RNFT1Q5M7Z0 435 aa27.45■■□□□ 1.98
CTCF-203ENST00000566078 TMEM201Q5SNT2 666 aa27.45■■□□□ 1.98
CTCF-203ENST00000566078 BCDIN3DQ7Z5W3 292 aaKnown RBP27.45■■□□□ 1.98
CTCF-203ENST00000566078 FAM26EQ8N5C1 309 aa27.45■■□□□ 1.98
CTCF-203ENST00000566078 INIPQ9NRY2 104 aa27.45■■□□□ 1.98
CTCF-203ENST00000566078 BLOC1S6Q9UL45 172 aa27.45■■□□□ 1.98
CTCF-203ENST00000566078 PCDHGB7Q9Y5F8 929 aa27.45■■□□□ 1.98
CTCF-203ENST00000566078 A0A0J9YW62 118 aa27.44■■□□□ 1.98
CTCF-203ENST00000566078 MED19A0JLT2 244 aaPredicted RBP27.44■■□□□ 1.98
CTCF-203ENST00000566078 RIIAD1A6NNX1 92 aa27.44■■□□□ 1.98
CTCF-203ENST00000566078 K7EM74 188 aa27.44■■□□□ 1.98
CTCF-203ENST00000566078 TNFSF11O14788 317 aa27.44■■□□□ 1.98
CTCF-203ENST00000566078 SEC14L5O43304 696 aa27.44■■□□□ 1.98
CTCF-203ENST00000566078 ENTPD6O75354 484 aa27.44■■□□□ 1.98
CTCF-203ENST00000566078 CCDC159P0C7I6 412 aa27.44■■□□□ 1.98
CTCF-203ENST00000566078 CLDN20P56880 219 aa27.44■■□□□ 1.98
CTCF-203ENST00000566078 SLC35A1P78382 337 aa27.44■■□□□ 1.98
CTCF-203ENST00000566078 GGNQ86UU5 652 aa27.44■■□□□ 1.98
CTCF-203ENST00000566078 LRR1Q96L50 414 aa27.44■■□□□ 1.98
CTCF-203ENST00000566078 ARPC3O15145 178 aa27.43■■□□□ 1.98
CTCF-203ENST00000566078 SERPINI2O75830 405 aa27.43■■□□□ 1.98
CTCF-203ENST00000566078 HOXD11P31277 338 aaPredicted RBP27.43■■□□□ 1.98
CTCF-203ENST00000566078 STARP49675 285 aa27.43■■□□□ 1.98
CTCF-203ENST00000566078 PUDPQ08623 228 aa27.43■■□□□ 1.98
CTCF-203ENST00000566078 OCLNQ16625 522 aa27.43■■□□□ 1.98
CTCF-203ENST00000566078 UBQLNLQ8IYU4 475 aa27.43■■□□□ 1.98
CTCF-203ENST00000566078 RASD2Q96D21 266 aa27.43■■□□□ 1.98
CTCF-203ENST00000566078 Q96MT0 163 aa27.43■■□□□ 1.98
CTCF-203ENST00000566078 B3GALT5Q9Y2C3 310 aa27.43■■□□□ 1.98
CTCF-203ENST00000566078 EIF1AYO14602 144 aaKnown RBP27.42■■□□□ 1.98
CTCF-203ENST00000566078 PLGP00747 810 aaPredicted RBP27.42■■□□□ 1.98
CTCF-203ENST00000566078 IFNGP01579 166 aa27.42■■□□□ 1.98
CTCF-203ENST00000566078 SLC10A1Q14973 349 aa27.42■■□□□ 1.98
CTCF-203ENST00000566078 TRILQ7L0X0 811 aa27.42■■□□□ 1.98
CTCF-203ENST00000566078 FAM122BQ7Z309 247 aa27.42■■□□□ 1.98
CTCF-203ENST00000566078 TMEM99Q8N816 258 aa27.42■■□□□ 1.98
CTCF-203ENST00000566078 LSM14AQ8ND56 463 aaKnown RBP27.42■■□□□ 1.98
CTCF-203ENST00000566078 ADPRHL1Q8NDY3 354 aa27.42■■□□□ 1.98
CTCF-203ENST00000566078 ABHD17AQ96GS6 310 aa27.42■■□□□ 1.98
CTCF-203ENST00000566078 TSPAN32Q96QS1 320 aa27.42■■□□□ 1.98
CTCF-203ENST00000566078 DEFB127Q9H1M4 99 aa27.42■■□□□ 1.98
CTCF-203ENST00000566078 ACKR4Q9NPB9 350 aa27.42■■□□□ 1.98
CTCF-203ENST00000566078 SCN3BQ9NY72 215 aa27.42■■□□□ 1.98
CTCF-203ENST00000566078 LIPGQ9Y5X9 500 aa27.42■■□□□ 1.98
CTCF-203ENST00000566078 TEX13CA0A0J9YWL9 993 aa27.41■■□□□ 1.98
CTCF-203ENST00000566078 SH3D21A4FU49 640 aa27.41■■□□□ 1.98
CTCF-203ENST00000566078 H0YC42 278 aa27.41■■□□□ 1.98
CTCF-203ENST00000566078 MS4A18H0YCH9 400 aa27.41■■□□□ 1.98
CTCF-203ENST00000566078 TFECO14948 347 aaPredicted RBP27.41■■□□□ 1.98
CTCF-203ENST00000566078 IDH3BO43837 385 aa27.41■■□□□ 1.98
CTCF-203ENST00000566078 APEHP13798 732 aaKnown RBP27.41■■□□□ 1.98
CTCF-203ENST00000566078 HIST1H1CP16403 213 aaKnown RBP27.41■■□□□ 1.98
CTCF-203ENST00000566078 ZNF24P17028 368 aa27.41■■□□□ 1.98
CTCF-203ENST00000566078 ZNF3P17036 446 aa27.41■■□□□ 1.98
CTCF-203ENST00000566078 CSNK2A1P68400 391 aaPredicted RBP27.41■■□□□ 1.98
CTCF-203ENST00000566078 ZP4Q12836 540 aa27.41■■□□□ 1.98
CTCF-203ENST00000566078 MS4A18Q3C1V0 323 aa27.41■■□□□ 1.98
CTCF-203ENST00000566078 SLC25A30Q5SVS4 291 aa27.41■■□□□ 1.98
CTCF-203ENST00000566078 MEDAGQ5VYS4 303 aa27.41■■□□□ 1.98
CTCF-203ENST00000566078 Q6ZS92 163 aa27.41■■□□□ 1.98
CTCF-203ENST00000566078 KDM8Q8N371 416 aa27.41■■□□□ 1.98
CTCF-203ENST00000566078 Q96M85 177 aa27.41■■□□□ 1.98
CTCF-203ENST00000566078 MFRPQ9BY79 579 aa27.41■■□□□ 1.98
CTCF-203ENST00000566078 ZDHHC11Q9H8X9 412 aa27.41■■□□□ 1.98
CTCF-203ENST00000566078 HINT3Q9NQE9 182 aaKnown RBP27.41■■□□□ 1.98
CTCF-203ENST00000566078 KLHL21Q9UJP4 597 aa27.41■■□□□ 1.98
CTCF-203ENST00000566078 CHD8Q9HCK8 2581 aa27.41■■□□□ 1.98
CTCF-203ENST00000566078 GABARAPL2P60520 117 aa27.41■■□□□ 1.98
CTCF-203ENST00000566078 KHDRBS1Q07666 443 aaKnown RBP eCLIP27.41■■□□□ 1.98
CTCF-203ENST00000566078 ESPNLQ6ZVH7 1005 aa27.41■■□□□ 1.98
CTCF-203ENST00000566078 CXXC5Q7LFL8 322 aaKnown RBP27.41■■□□□ 1.98
CTCF-203ENST00000566078 RBMXL3Q8N7X1 1067 aaKnown RBP27.41■■□□□ 1.98
CTCF-203ENST00000566078 SDR9C7Q8NEX9 313 aa27.41■■□□□ 1.98
CTCF-203ENST00000566078 OR52E2Q8NGJ4 325 aa27.41■■□□□ 1.98
CTCF-203ENST00000566078 OR4K13Q8NH42 304 aa27.41■■□□□ 1.98
CTCF-203ENST00000566078 SNRNP27Q8WVK2 155 aaKnown RBP27.41■■□□□ 1.98
CTCF-203ENST00000566078 OTULINQ96BN8 352 aa27.41■■□□□ 1.98
CTCF-203ENST00000566078 ZNF582Q96NG8 517 aaPredicted RBP27.41■■□□□ 1.98
CTCF-203ENST00000566078 RHNO1Q9BSD3 238 aa27.41■■□□□ 1.98
CTCF-203ENST00000566078 FN3KQ9H479 309 aa27.41■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms