RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 MREGQ8N565 214 aa14.63□□□□□ -0.07
CLN3-211ENST00000564091 GLB1L3Q8NCI6 653 aaPredicted RBP14.63□□□□□ -0.07
CLN3-211ENST00000564091 MAGEE2Q8TD90 523 aaPredicted RBP14.63□□□□□ -0.07
CLN3-211ENST00000564091 STK35Q8TDR2 534 aa14.63□□□□□ -0.07
CLN3-211ENST00000564091 PTDSS2Q9BVG9 487 aa14.63□□□□□ -0.07
CLN3-211ENST00000564091 MYOZ1Q9NP98 299 aaPredicted RBP14.63□□□□□ -0.07
CLN3-211ENST00000564091 ZNF232Q9UNY5 417 aa14.63□□□□□ -0.07
CLN3-211ENST00000564091 HDAC3O15379 428 aa14.62□□□□□ -0.07
CLN3-211ENST00000564091 SLC22A3O75751 556 aa14.62□□□□□ -0.07
CLN3-211ENST00000564091 PDE5AO76074 875 aa14.62□□□□□ -0.07
CLN3-211ENST00000564091 ANP32DO95626 131 aa14.62□□□□□ -0.07
CLN3-211ENST00000564091 STAMBPO95630 424 aa14.62□□□□□ -0.07
CLN3-211ENST00000564091 IGKV3-15P01624 115 aa14.62□□□□□ -0.07
CLN3-211ENST00000564091 IL6P05231 212 aa14.62□□□□□ -0.07
CLN3-211ENST00000564091 NUDT7P0C024 238 aa14.62□□□□□ -0.07
CLN3-211ENST00000564091 RPS5P46782 204 aaKnown RBP14.62□□□□□ -0.07
CLN3-211ENST00000564091 IDH3GP51553 393 aaPredicted RBP14.62□□□□□ -0.07
CLN3-211ENST00000564091 EGR4Q05215 589 aa14.62□□□□□ -0.07
CLN3-211ENST00000564091 CR1LQ2VPA4 569 aa14.62□□□□□ -0.07
CLN3-211ENST00000564091 SVOPLQ8N434 492 aa14.62□□□□□ -0.07
CLN3-211ENST00000564091 ANKRD42Q8N9B4 389 aa14.62□□□□□ -0.07
CLN3-211ENST00000564091 ZNF540Q8NDQ6 660 aa14.62□□□□□ -0.07
CLN3-211ENST00000564091 OR4F15Q8NGB8 312 aa14.62□□□□□ -0.07
CLN3-211ENST00000564091 MFSD8Q8NHS3 518 aa14.62□□□□□ -0.07
CLN3-211ENST00000564091 VPS33AQ96AX1 596 aa14.62□□□□□ -0.07
CLN3-211ENST00000564091 ZNF837Q96EG3 531 aaPredicted RBP14.62□□□□□ -0.07
CLN3-211ENST00000564091 KTI12Q96EK9 354 aaPredicted RBP14.62□□□□□ -0.07
CLN3-211ENST00000564091 ZNF317Q96PQ6 595 aaPredicted RBP14.62□□□□□ -0.07
CLN3-211ENST00000564091 SPATA9Q9BWV2 254 aa14.62□□□□□ -0.07
CLN3-211ENST00000564091 LINC00470Q9BZP3 86 aa14.62□□□□□ -0.07
CLN3-211ENST00000564091 RAB1BQ9H0U4 201 aa14.62□□□□□ -0.07
CLN3-211ENST00000564091 PRDM4Q9UKN5 801 aa14.62□□□□□ -0.07
CLN3-211ENST00000564091 A0A096LPI6 279 aa14.61□□□□□ -0.07
CLN3-211ENST00000564091 A0A0G2JPF8 293 aa14.61□□□□□ -0.07
CLN3-211ENST00000564091 SH3PXD2BA1X283 911 aa14.61□□□□□ -0.07
CLN3-211ENST00000564091 ZNF503-AS2A6NEH8 195 aa14.61□□□□□ -0.07
CLN3-211ENST00000564091 HNRNPCL2B2RXH8 293 aa14.61□□□□□ -0.07
CLN3-211ENST00000564091 HNRNPCL3B7ZW38 293 aa14.61□□□□□ -0.07
CLN3-211ENST00000564091 hCG_2039718K7EN88 272 aa14.61□□□□□ -0.07
CLN3-211ENST00000564091 HNRNPCL1O60812 293 aaKnown RBP14.61□□□□□ -0.07
CLN3-211ENST00000564091 ZNF432O94892 652 aa14.61□□□□□ -0.07
CLN3-211ENST00000564091 HNRNPCL4P0DMR1 293 aa14.61□□□□□ -0.07
CLN3-211ENST00000564091 DAOP14920 347 aa14.61□□□□□ -0.07
CLN3-211ENST00000564091 CBR1P16152 277 aa14.61□□□□□ -0.07
CLN3-211ENST00000564091 ZNF43P17038 809 aa14.61□□□□□ -0.07
CLN3-211ENST00000564091 HNF1AP20823 631 aa14.61□□□□□ -0.07
CLN3-211ENST00000564091 PAX7P23759 505 aa14.61□□□□□ -0.07
CLN3-211ENST00000564091 IL2RGP31785 369 aa14.61□□□□□ -0.07
CLN3-211ENST00000564091 PPOXP50336 477 aa14.61□□□□□ -0.07
CLN3-211ENST00000564091 C3orf36Q3SXR2 165 aa14.61□□□□□ -0.07
CLN3-211ENST00000564091 PDCD4Q53EL6 469 aaKnown RBP14.61□□□□□ -0.07
CLN3-211ENST00000564091 TNFAIP8L3Q5GJ75 292 aa14.61□□□□□ -0.07
CLN3-211ENST00000564091 ZNF311Q5JNZ3 666 aa14.61□□□□□ -0.07
CLN3-211ENST00000564091 CEP85LQ5SZL2 805 aa14.61□□□□□ -0.07
CLN3-211ENST00000564091 HHATQ5VTY9 493 aa14.61□□□□□ -0.07
CLN3-211ENST00000564091 SPATA21Q7Z572 469 aa14.61□□□□□ -0.07
CLN3-211ENST00000564091 FAM169BQ8N8A8 192 aa14.61□□□□□ -0.07
CLN3-211ENST00000564091 NUP37Q8NFH4 326 aa14.61□□□□□ -0.07
CLN3-211ENST00000564091 DOK1Q99704 481 aa14.61□□□□□ -0.07
CLN3-211ENST00000564091 CACYBPQ9HB71 228 aaKnown RBP14.61□□□□□ -0.07
CLN3-211ENST00000564091 B3GAT1Q9P2W7 334 aa14.61□□□□□ -0.07
CLN3-211ENST00000564091 MALRD1Q5VYJ5 2156 aa14.6□□□□□ -0.07
CLN3-211ENST00000564091 TMEM129A0AVI4 362 aa14.6□□□□□ -0.07
CLN3-211ENST00000564091 TRPC5OSA6NMA1 111 aa14.6□□□□□ -0.07
CLN3-211ENST00000564091 HAX1O00165 279 aa14.6□□□□□ -0.07
CLN3-211ENST00000564091 ZCCHC18P0CG32 403 aa14.6□□□□□ -0.07
CLN3-211ENST00000564091 HOXB1P14653 301 aaPredicted RBP14.6□□□□□ -0.07
CLN3-211ENST00000564091 IDO1P14902 403 aa14.6□□□□□ -0.07
CLN3-211ENST00000564091 NPR2P20594 1047 aa14.6□□□□□ -0.07
CLN3-211ENST00000564091 GTF2E2P29084 291 aaKnown RBP14.6□□□□□ -0.07
CLN3-211ENST00000564091 SH3BGRP55822 239 aaPredicted RBP14.6□□□□□ -0.07
CLN3-211ENST00000564091 WDR4P57081 412 aaKnown RBP14.6□□□□□ -0.07
CLN3-211ENST00000564091 NPRL3Q12980 569 aa14.6□□□□□ -0.07
CLN3-211ENST00000564091 C1DQ13901 141 aaKnown RBP14.6□□□□□ -0.07
CLN3-211ENST00000564091 ZSWIM7Q19AV6 140 aa14.6□□□□□ -0.07
CLN3-211ENST00000564091 SLC9B1Q4ZJI4 515 aa14.6□□□□□ -0.07
CLN3-211ENST00000564091 C6orf10Q5SRN2 563 aa14.6□□□□□ -0.07
CLN3-211ENST00000564091 OR9I1Q8NGQ6 314 aa14.6□□□□□ -0.07
CLN3-211ENST00000564091 MAL2Q969L2 176 aa14.6□□□□□ -0.07
CLN3-211ENST00000564091 ITCHQ96J02 903 aa14.6□□□□□ -0.07
CLN3-211ENST00000564091 ARMC7Q9H6L4 198 aa14.6□□□□□ -0.07
CLN3-211ENST00000564091 ZNF442Q9H7R0 627 aa14.6□□□□□ -0.07
CLN3-211ENST00000564091 GPR35Q9HC97 309 aa14.6□□□□□ -0.07
CLN3-211ENST00000564091 THAP1Q9NVV9 213 aa14.6□□□□□ -0.07
CLN3-211ENST00000564091 RCE1Q9Y256 329 aa14.6□□□□□ -0.07
CLN3-211ENST00000564091 IFT52Q9Y366 437 aa14.6□□□□□ -0.07
CLN3-211ENST00000564091 ARFGEF3Q5TH69 2177 aa14.6□□□□□ -0.07
CLN3-211ENST00000564091 IGHV2OR16-5A0A0B4J2B6 119 aa14.59□□□□□ -0.07
CLN3-211ENST00000564091 TMEM247A6NEH6 219 aa14.59□□□□□ -0.07
CLN3-211ENST00000564091 RPL36A-HNRNPH2H7BZ11 118 aa14.59□□□□□ -0.07
CLN3-211ENST00000564091 M0R082 166 aa14.59□□□□□ -0.07
CLN3-211ENST00000564091 LILRA1O75019 489 aa14.59□□□□□ -0.07
CLN3-211ENST00000564091 SNNO75324 88 aaPredicted RBP14.59□□□□□ -0.07
CLN3-211ENST00000564091 SLC43A1O75387 559 aa14.59□□□□□ -0.07
CLN3-211ENST00000564091 SEC14L2O76054 403 aa14.59□□□□□ -0.07
CLN3-211ENST00000564091 IGFBP1P08833 259 aaPredicted RBP14.59□□□□□ -0.07
CLN3-211ENST00000564091 CAPZA2P47755 286 aa14.59□□□□□ -0.07
CLN3-211ENST00000564091 CEACAM16Q2WEN9 425 aa14.59□□□□□ -0.07
CLN3-211ENST00000564091 MDP1Q86V88 176 aa14.59□□□□□ -0.07
CLN3-211ENST00000564091 GPR137CQ8N3F9 429 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms