RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 IMMP1LQ96LU5 166 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 FER1L6-AS2Q96M78 137 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 ADAD1Q96M93 576 aaKnown RBP6.83□□□□□ -1.32
VPS39-204ENST00000561818 KLHL15Q96M94 604 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 CMTM3Q96MX0 182 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 OR5M11Q96RB7 305 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 RASL10BQ96S79 203 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 WDR77Q9BQA1 342 aaPredicted RBP6.83□□□□□ -1.32
VPS39-204ENST00000561818 ALG12Q9BV10 488 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 EDEM2Q9BV94 578 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 KATNB1Q9BVA0 655 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 NMNAT2Q9BZQ4 307 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 SLITRK2Q9H156 845 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 OR51V1Q9H2C8 321 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 TXNIPQ9H3M7 391 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 ZBTB20Q9HC78 741 aaPredicted RBP6.83□□□□□ -1.32
VPS39-204ENST00000561818 HPF1Q9NWY4 346 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 OCIAD1Q9NX40 245 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 B4GALT7Q9UBV7 327 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 TRAPPC4Q9Y296 219 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 RPH3AQ9Y2J0 694 aaPredicted RBP6.83□□□□□ -1.32
VPS39-204ENST00000561818 MRPS18CQ9Y3D5 142 aaKnown RBP6.83□□□□□ -1.32
VPS39-204ENST00000561818 IER3IP1Q9Y5U9 82 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 UNC80Q8N2C7 3258 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 NCOR1O75376 2440 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 RP1P56715 2156 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 SLC35F4A4IF30 521 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 PRR33A8MZF0 331 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.82□□□□□ -1.32
VPS39-204ENST00000561818 BLOC1S5-TXNDC5H3BN57 136 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 STMND1H3BQB6 276 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 SOCS6O14544 535 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 PDCD5O14737 125 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 RNF13O43567 381 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 SCO2O43819 266 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 ZNF254O75437 659 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 ITGA10O75578 1167 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 CBR3O75828 277 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 TIAF1O95411 115 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 DLGAP3O95886 979 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 APOA1P02647 267 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 BGLAPP02818 100 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 RAF1P04049 648 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 HRGP04196 525 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 KRT8P05787 483 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 IGFBP1P08833 259 aaPredicted RBP6.82□□□□□ -1.32
VPS39-204ENST00000561818 INHBBP09529 407 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 COX6A1P12074 109 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 HIST1H1CP16403 213 aaKnown RBP6.82□□□□□ -1.32
VPS39-204ENST00000561818 SPI1P17947 270 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 TALDO1P37837 337 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 ETV5P41161 510 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 CRYBB2P43320 205 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 ETV1P50549 477 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 GAS1P54826 345 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 DSCR4P56555 118 aaPredicted RBP6.82□□□□□ -1.32
VPS39-204ENST00000561818 FXYD6P3P58550 94 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 GPR85P60893 370 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 NCS1P62166 190 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 RPL18Q07020 188 aaKnown RBP6.82□□□□□ -1.32
VPS39-204ENST00000561818 AQP6Q13520 282 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 SSX1Q16384 188 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 ZNF791Q3KP31 576 aaPredicted RBP6.82□□□□□ -1.32
VPS39-204ENST00000561818 CRTC2Q53ET0 693 aaPredicted RBP6.82□□□□□ -1.32
VPS39-204ENST00000561818 YIF1BQ5BJH7 314 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 PRAMEF17Q5VTA0 474 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 HACD4Q5VWC8 232 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 LIPKQ5VXJ0 399 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 SLC22A10Q63ZE4 541 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 LEG1Q6P5S2 330 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 IGF2-ASQ6U949 168 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 CBLN3Q6UW01 205 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 BAIAP2L2Q6UXY1 529 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 THSD4Q6ZMP0 1018 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 H1FNTQ75WM6 255 aaPredicted RBP6.82□□□□□ -1.32
VPS39-204ENST00000561818 MARCH3Q86UD3 253 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 PLCZ1Q86YW0 608 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 SLC35F2Q8IXU6 374 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 GATSQ8NAP1 163 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 SLC38A9Q8NBW4 561 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 ZNF485Q8NCK3 441 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 LSM14AQ8ND56 463 aaKnown RBP6.82□□□□□ -1.32
VPS39-204ENST00000561818 NPEPL1Q8NDH3 523 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 NLGN4YQ8NFZ3 816 aaPredicted RBP6.82□□□□□ -1.32
VPS39-204ENST00000561818 NEIL3Q8TAT5 605 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 NDNFQ8TB73 568 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 PAQR8Q8TEZ7 354 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 DUSP19Q8WTR2 217 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 KCNE4Q8WWG9 221 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 KISS1RQ969F8 398 aaPredicted RBP6.82□□□□□ -1.32
VPS39-204ENST00000561818 SMIM19Q96E16 107 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 PIGQQ9BRB3 760 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 SLC30A2Q9BRI3 323 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 TTYH2Q9BSA4 534 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 RHNO1Q9BSD3 238 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 NAA11Q9BSU3 229 aaPredicted RBP6.82□□□□□ -1.32
VPS39-204ENST00000561818 PRR14Q9BWN1 585 aa6.82□□□□□ -1.32
VPS39-204ENST00000561818 C6orf62Q9GZU0 229 aaPredicted RBP6.82□□□□□ -1.32
VPS39-204ENST00000561818 NAA50Q9GZZ1 169 aaKnown RBP6.82□□□□□ -1.32
VPS39-204ENST00000561818 COMMD4Q9H0A8 199 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms