RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 NUP54Q7Z3B4 507 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 ZNF761Q86XN6 746 aaPredicted RBP6.59□□□□□ -1.35
USP3-210ENST00000559192 TCEAL8Q8IYN2 117 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 GPR32P1Q8NGA4 272 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 OR6M1Q8NGM8 313 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 MITD1Q8WV92 249 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 HPSE2Q8WWQ2 592 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 SLC25A44Q96H78 314 aaPredicted RBP6.59□□□□□ -1.35
USP3-210ENST00000559192 NPIPA1Q9UND3 350 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 LOC102724200A0A096LPH7 203 aaPredicted RBP6.59□□□□□ -1.36
USP3-210ENST00000559192 SGK494L7N484 410 aa6.59□□□□□ -1.36
USP3-210ENST00000559192 TO15178 435 aa6.59□□□□□ -1.36
USP3-210ENST00000559192 CSTBP04080 98 aaKnown RBP6.59□□□□□ -1.36
USP3-210ENST00000559192 ATP1B1P05026 303 aa6.59□□□□□ -1.36
USP3-210ENST00000559192 SRMP19623 302 aa6.59□□□□□ -1.36
USP3-210ENST00000559192 S1PR1P21453 382 aa6.59□□□□□ -1.36
USP3-210ENST00000559192 BCL6P41182 706 aa6.59□□□□□ -1.36
USP3-210ENST00000559192 ACTBP60709 375 aa6.59□□□□□ -1.36
USP3-210ENST00000559192 ACTG1P63261 375 aa6.59□□□□□ -1.36
USP3-210ENST00000559192 TPBGQ13641 420 aa6.59□□□□□ -1.36
USP3-210ENST00000559192 ST3GAL2Q16842 350 aa6.59□□□□□ -1.36
USP3-210ENST00000559192 FAM122BQ7Z309 247 aa6.59□□□□□ -1.36
USP3-210ENST00000559192 OR52H1Q8NGJ2 320 aa6.59□□□□□ -1.36
USP3-210ENST00000559192 HAS2Q92819 552 aa6.59□□□□□ -1.36
USP3-210ENST00000559192 INSM2Q96T92 566 aaPredicted RBP6.59□□□□□ -1.36
USP3-210ENST00000559192 POFUT1Q9H488 388 aa6.59□□□□□ -1.36
USP3-210ENST00000559192 HRASLSQ9HDD0 168 aa6.59□□□□□ -1.36
USP3-210ENST00000559192 FGF20Q9NP95 211 aaPredicted RBP6.59□□□□□ -1.36
USP3-210ENST00000559192 MBD1Q9UIS9 605 aaPredicted RBP6.59□□□□□ -1.36
USP3-210ENST00000559192 MCM3APO60318 1980 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 SCN4AP35499 1836 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 M0QYG6 137 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 SOX1O00570 391 aaPredicted RBP6.58□□□□□ -1.36
USP3-210ENST00000559192 RGS11O94810 467 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 HLA-AP01891 365 aaKnown RBP6.58□□□□□ -1.36
USP3-210ENST00000559192 ZNF250P15622 560 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 ELAVL3Q14576 367 aaKnown RBP6.58□□□□□ -1.36
USP3-210ENST00000559192 GRM7Q14831 915 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 RNASE10Q5GAN6 216 aaKnown RBP6.58□□□□□ -1.36
USP3-210ENST00000559192 NIPAL3Q6P499 406 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 GAREM2Q75VX8 874 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 MOB1BQ7L9L4 216 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 LIX1LQ8IVB5 337 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 CMTM4Q8IZR5 234 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 OR52R1Q8NGF1 315 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 HERVK_113Q902F9 699 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 THRSPQ92748 146 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 FAM46BQ96A09 425 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 MCCC2Q9HCC0 563 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 KCNS2Q9ULS6 477 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 PCDHGA5Q9Y5G8 931 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 KCNE3Q9Y6H6 103 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 CCSO14618 274 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 KCNJ13O60928 360 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 RAD51DO75771 328 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 ACSM4P0C7M7 580 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 ATP5A1P25705 553 aaKnown RBP6.58□□□□□ -1.36
USP3-210ENST00000559192 CCR9P51686 369 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 TRA2BP62995 288 aaKnown RBP6.58□□□□□ -1.36
USP3-210ENST00000559192 TLE3Q04726 772 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 ZNF620Q6ZNG0 422 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 LAS2Q8IYD9 372 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 C9orf62Q8N4C0 152 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 SLC16A11Q8NCK7 471 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 GLYATL2Q8WU03 294 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 TEAD3Q99594 435 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 DPYSL5Q9BPU6 564 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 DNTTIP1Q9H147 329 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 SLC6A5Q9Y345 797 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 ZNF736B4DX44 427 aaPredicted RBP6.58□□□□□ -1.36
USP3-210ENST00000559192 FFAR1O14842 300 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 HCRTR2O43614 444 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 DPM1O60762 260 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 WNT1P04628 370 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 S100A8P05109 93 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 ITGA5P08648 1049 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 HNF1AP20823 631 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 PPT1P50897 306 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 KIAA0141Q14154 515 aaPredicted RBP6.58□□□□□ -1.36
USP3-210ENST00000559192 AGERQ15109 404 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 FAM74A1Q5RGS3 127 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 PRSS42Q7Z5A4 293 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 RASGRP3Q8IV61 690 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 SKA3Q8IX90 412 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 PLA2G15Q8NCC3 412 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 SEMA6DQ8NFY4 1073 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 OR51D1Q8NGF3 324 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 ZBTB8AQ96BR9 441 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 HIST1H2AAQ96QV6 131 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 SERINC2Q96SA4 455 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 OCSTAMPQ9BR26 566 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 G6PC3Q9BUM1 346 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 HCAR1Q9BXC0 346 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 SLC25A19Q9HC21 320 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 TMEM100Q9NV29 134 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 EPHA6Q9UF33 1036 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 ZNF593O00488 134 aaPredicted RBP6.58□□□□□ -1.36
USP3-210ENST00000559192 SRPX2O60687 465 aaPredicted RBP6.58□□□□□ -1.36
USP3-210ENST00000559192 F13BP05160 661 aa6.58□□□□□ -1.36
USP3-210ENST00000559192 CDK2P24941 298 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms