RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 DTNBP1Q96EV8 351 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 GIMAP5Q96F15 307 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 TMEM19Q96HH6 336 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 TPD52L3Q96J77 140 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 RDH12Q96NR8 316 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 BTBD9Q96Q07 612 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 SDF2Q99470 211 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 SEPHS2Q99611 448 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 ULBP3Q9BZM4 244 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 TRIM4Q9C037 500 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 SLC5A7Q9GZV3 580 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 REEP1Q9H902 201 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 KRCC1Q9NPI7 259 aaPredicted RBP4.67□□□□□ -1.66
LDLR-209ENST00000558528 THSD1Q9NS62 852 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 C3orf18Q9UK00 162 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 WDR45Q9Y484 360 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 OR10H1Q9Y4A9 318 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 CHST2Q9Y4C5 530 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 TMEM184BQ9Y519 407 aaPredicted RBP4.67□□□□□ -1.66
LDLR-209ENST00000558528 LRRC42Q9Y546 428 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 HEMK1Q9Y5R4 338 aaPredicted RBP4.67□□□□□ -1.66
LDLR-209ENST00000558528 SIRT4Q9Y6E7 314 aaPredicted RBP4.67□□□□□ -1.66
LDLR-209ENST00000558528 NUMA1Q14980 2115 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 ATG2BQ96BY7 2078 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 CSMD1Q96PZ7 3565 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 FRG2CA6NGY1 282 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 SAGE2PA6NJ88 616 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 KDM4EB2RXH2 506 aaPredicted RBP4.66□□□□□ -1.66
LDLR-209ENST00000558528 IDSB3KWA1 339 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 G3V2T6 193 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 H3BNX3 289 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 TO15178 435 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 SEC14L5O43304 696 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 DNAJB6O75190 326 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 CDC123O75794 336 aaPredicted RBP4.66□□□□□ -1.66
LDLR-209ENST00000558528 STK17BO94768 372 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 MFN2O95140 757 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 H6PDO95479 791 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 LGI1O95970 557 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 IL1AP01583 271 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 MBPP02686 304 aaPredicted RBP4.66□□□□□ -1.66
LDLR-209ENST00000558528 IL6RP08887 468 aaPredicted RBP4.66□□□□□ -1.66
LDLR-209ENST00000558528 PABPC4LP0CB38 370 aaKnown RBP4.66□□□□□ -1.66
LDLR-209ENST00000558528 THRBP10828 461 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 VPREB1P12018 145 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 ANXA8P13928 327 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 RPS2P15880 293 aaKnown RBP4.66□□□□□ -1.66
LDLR-209ENST00000558528 MAOAP21397 527 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 S1PR1P21453 382 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 GATA3P23771 443 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 APOBEC3AP31941 199 aaPredicted RBP4.66□□□□□ -1.66
LDLR-209ENST00000558528 PIGAP37287 484 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 MAP3K8P41279 467 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 FOLR3P41439 243 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 MAGEA2P43356 314 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 TMED10P49755 219 aaKnown RBP4.66□□□□□ -1.66
LDLR-209ENST00000558528 EMDP50402 254 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 ATP12AP54707 1039 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 HTD2P86397 168 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 ID2Q02363 134 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 ST3GAL3Q11203 375 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 NPRL3Q12980 569 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 NCF4Q15080 339 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 LTB4RQ15722 352 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 SYPL1Q16563 259 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 SYT16Q17RD7 645 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 VWA2Q5GFL6 755 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 DCST2Q5T1A1 773 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 WLSQ5T9L3 541 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 OGFRL1Q5TC84 451 aaPredicted RBP4.66□□□□□ -1.66
LDLR-209ENST00000558528 HES3Q5TGS1 186 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 TMEM268Q5VZI3 342 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 B3GNTL1Q67FW5 361 aaPredicted RBP4.66□□□□□ -1.66
LDLR-209ENST00000558528 OR2T5Q6IEZ7 315 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 TMEM205Q6UW68 189 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 HSDL2Q6YN16 418 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 ZNF517Q6ZMY9 492 aaPredicted RBP4.66□□□□□ -1.66
LDLR-209ENST00000558528 RNF144BQ7Z419 303 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 CPEB2Q7Z5Q1 589 aaKnown RBP4.66□□□□□ -1.66
LDLR-209ENST00000558528 WDR53Q7Z5U6 358 aaPredicted RBP4.66□□□□□ -1.66
LDLR-209ENST00000558528 MISPQ8IVT2 679 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 METTL27Q8N6F8 245 aaPredicted RBP4.66□□□□□ -1.66
LDLR-209ENST00000558528 ZNF615Q8N8J6 731 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 SLC16A11Q8NCK7 471 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 B3GNT7Q8NFL0 401 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 OR2T29Q8NH02 315 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 OR52P1PQ8NH57 321 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 NUBPLQ8TB37 319 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 M1APQ8TC57 530 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 FAM110BQ8TC76 370 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 RAB8BQ92930 207 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 MAL2Q969L2 176 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 SLCO4A1Q96BD0 722 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 OTUB1Q96FW1 271 aaPredicted RBP4.66□□□□□ -1.66
LDLR-209ENST00000558528 HARBI1Q96MB7 349 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 COL21A1Q96P44 957 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 PKP2Q99959 881 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 RBM4BQ9BQ04 359 aaKnown RBP4.66□□□□□ -1.66
LDLR-209ENST00000558528 RBM4Q9BWF3 364 aaKnown RBP4.66□□□□□ -1.66
LDLR-209ENST00000558528 OSBPL11Q9BXB4 747 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms