RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 OR51S1Q8NGJ8 323 aa2.78□□□□□ -1.96
SCFD1-221ENST00000556534 RAB3IL1Q8TBN0 382 aa2.78□□□□□ -1.96
SCFD1-221ENST00000556534 FAM110BQ8TC76 370 aa2.78□□□□□ -1.96
SCFD1-221ENST00000556534 SLC2A14Q8TDB8 520 aa2.78□□□□□ -1.96
SCFD1-221ENST00000556534 TCTEX1D2Q8WW35 142 aa2.78□□□□□ -1.96
SCFD1-221ENST00000556534 MRPS31Q92665 395 aaKnown RBP2.78□□□□□ -1.96
SCFD1-221ENST00000556534 RPRD1AQ96P16 312 aaPredicted RBP2.78□□□□□ -1.96
SCFD1-221ENST00000556534 ZNF670Q9BS34 389 aa2.78□□□□□ -1.96
SCFD1-221ENST00000556534 PKIBQ9C010 78 aa2.78□□□□□ -1.96
SCFD1-221ENST00000556534 ASF1AQ9Y294 204 aa2.78□□□□□ -1.96
SCFD1-221ENST00000556534 MTCL1Q9Y4B5 1905 aaKnown RBP2.78□□□□□ -1.97
SCFD1-221ENST00000556534 RPAP1Q9BWH6 1393 aaPredicted RBP2.77□□□□□ -1.97
SCFD1-221ENST00000556534 IGKV1D-8A0A087WSZ0 117 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 A6NDX4 124 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 FAM166BA8MTA8 275 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 N4BP1O75113 896 aaKnown RBP2.77□□□□□ -1.97
SCFD1-221ENST00000556534 UPK3AO75631 287 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 CIB2O75838 187 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 MMP1P03956 469 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 GAPDHP04406 335 aaKnown RBP2.77□□□□□ -1.97
SCFD1-221ENST00000556534 ETS2P15036 469 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 HTR1FP30939 366 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 DAP3P51398 398 aaKnown RBP2.77□□□□□ -1.97
SCFD1-221ENST00000556534 TPMTP51580 245 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 CDH4P55283 916 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 ENPEPQ07075 957 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 VGLL4Q14135 290 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 GK3PQ14409 553 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 TRIM16LQ309B1 348 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 NSUN5P1Q3KNT7 163 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 BCL7AQ4VC05 210 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 C6orf226Q5I0X4 101 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 C1orf100Q5SVJ3 147 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 C1orf220Q5T0J3 134 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 C11orf71Q6IPW1 123 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 KDM7AQ6ZMT4 941 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 COX15Q7KZN9 410 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 RUFY3Q7L099 469 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 PRSS41Q7RTY9 318 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 ZNF429Q86V71 674 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 ECHDC2Q86YB7 292 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 C6orf223Q8N319 242 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 OR2L13Q8N349 312 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 PNKDQ8N490 385 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 NECAB1Q8N987 351 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 Q8N9W7 124 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 ST8SIA1Q92185 356 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 RAPGEF5Q92565 580 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 C12orf42Q96LP6 360 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 OR2M2Q96R28 347 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 COPS8Q99627 209 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 TSG101Q99816 390 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 SLC39A3Q9BRY0 314 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 YY1AP1Q9H869 796 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 SPATA7Q9P0W8 599 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 PHF11Q9UIL8 331 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 TP53TG5Q9Y2B4 290 aa2.77□□□□□ -1.97
SCFD1-221ENST00000556534 IGHV1OR21-1A0A087WYE8 117 aa2.76□□□□□ -1.97
SCFD1-221ENST00000556534 SNAI2O43623 268 aa2.76□□□□□ -1.97
SCFD1-221ENST00000556534 CXCL13O43927 109 aa2.76□□□□□ -1.97
SCFD1-221ENST00000556534 DIRAS1O95057 198 aa2.76□□□□□ -1.97
SCFD1-221ENST00000556534 NDUFB10O96000 172 aa2.76□□□□□ -1.97
SCFD1-221ENST00000556534 PABPC4LP0CB38 370 aaKnown RBP2.76□□□□□ -1.97
SCFD1-221ENST00000556534 HMGB2P26583 209 aaKnown RBP2.76□□□□□ -1.97
SCFD1-221ENST00000556534 GCAP28676 217 aa2.76□□□□□ -1.97
SCFD1-221ENST00000556534 YWHABP31946 246 aaKnown RBP2.76□□□□□ -1.97
SCFD1-221ENST00000556534 RPL13AP40429 203 aaKnown RBP2.76□□□□□ -1.97
SCFD1-221ENST00000556534 QARSP47897 775 aaKnown RBP2.76□□□□□ -1.97
SCFD1-221ENST00000556534 LHX2P50458 406 aa2.76□□□□□ -1.97
SCFD1-221ENST00000556534 PRRX1P54821 245 aa2.76□□□□□ -1.97
SCFD1-221ENST00000556534 SELENOTP62341 195 aa2.76□□□□□ -1.97
SCFD1-221ENST00000556534 SLC15A2Q16348 729 aa2.76□□□□□ -1.97
SCFD1-221ENST00000556534 DPYSL2Q16555 572 aa2.76□□□□□ -1.97
SCFD1-221ENST00000556534 ARMC12Q5T9G4 340 aa2.76□□□□□ -1.97
SCFD1-221ENST00000556534 PRAMEF20Q5VT98 475 aa2.76□□□□□ -1.97
SCFD1-221ENST00000556534 EGFL6Q8IUX8 553 aa2.76□□□□□ -1.97
SCFD1-221ENST00000556534 RDH10Q8IZV5 341 aa2.76□□□□□ -1.97
SCFD1-221ENST00000556534 ZNF786Q8N393 782 aa2.76□□□□□ -1.97
SCFD1-221ENST00000556534 MDS2Q8NDY4 140 aa2.76□□□□□ -1.97
SCFD1-221ENST00000556534 SDR9C7Q8NEX9 313 aa2.76□□□□□ -1.97
SCFD1-221ENST00000556534 OR2L3Q8NG85 312 aa2.76□□□□□ -1.97
SCFD1-221ENST00000556534 MARCH1Q8TCQ1 289 aa2.76□□□□□ -1.97
SCFD1-221ENST00000556534 BRSK1Q8TDC3 778 aa2.76□□□□□ -1.97
SCFD1-221ENST00000556534 RNF185Q96GF1 192 aa2.76□□□□□ -1.97
SCFD1-221ENST00000556534 TIMD4Q96H15 378 aa2.76□□□□□ -1.97
SCFD1-221ENST00000556534 KCNA7Q96RP8 456 aa2.76□□□□□ -1.97
SCFD1-221ENST00000556534 PLIN2Q99541 437 aa2.76□□□□□ -1.97
SCFD1-221ENST00000556534 RASL11BQ9BPW5 248 aa2.76□□□□□ -1.97
SCFD1-221ENST00000556534 NRIP2Q9BQI9 281 aa2.76□□□□□ -1.97
SCFD1-221ENST00000556534 TRIM62Q9BVG3 475 aa2.76□□□□□ -1.97
SCFD1-221ENST00000556534 PLGRKTQ9HBL7 147 aa2.76□□□□□ -1.97
SCFD1-221ENST00000556534 POPDC2Q9HBU9 364 aa2.76□□□□□ -1.97
SCFD1-221ENST00000556534 RAB20Q9NX57 234 aa2.76□□□□□ -1.97
SCFD1-221ENST00000556534 PRPF19Q9UMS4 504 aaKnown RBP2.76□□□□□ -1.97
SCFD1-221ENST00000556534 NPTNQ9Y639 398 aa2.76□□□□□ -1.97
SCFD1-221ENST00000556534 MYO10Q9HD67 2058 aa2.76□□□□□ -1.97
SCFD1-221ENST00000556534 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP2.75□□□□□ -1.97
SCFD1-221ENST00000556534 SCN2AQ99250 2005 aa2.75□□□□□ -1.97
SCFD1-221ENST00000556534 A0A1W2PPV9 198 aa2.75□□□□□ -1.97
SCFD1-221ENST00000556534 OR2AG2A6NM03 316 aa2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms