RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 KPNA4O00629 521 aaPredicted RBP8.56□□□□□ -1.04
LIMA1-211ENST00000552338 TNFSF11O14788 317 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 SMAD9O15198 467 aaKnown RBP8.56□□□□□ -1.04
LIMA1-211ENST00000552338 AHCYL1O43865 530 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 MITFO75030 526 aaPredicted RBP8.56□□□□□ -1.04
LIMA1-211ENST00000552338 WDR1O75083 606 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 SNAP29O95721 258 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 HIST1H2ABP04908 130 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 CD14P08571 375 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 SAGP10523 405 aaPredicted RBP8.56□□□□□ -1.04
LIMA1-211ENST00000552338 TFPIP10646 304 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 POU2F1P14859 743 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 CCNA2P20248 432 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 SFTPDP35247 375 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 RPL18Q07020 188 aaKnown RBP8.56□□□□□ -1.04
LIMA1-211ENST00000552338 PUDPQ08623 228 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 IL18R1Q13478 541 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 LY6DQ14210 128 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 SLC17A1Q14916 467 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 SLC25A30Q5SVS4 291 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 ZNF362Q5T0B9 420 aaPredicted RBP8.56□□□□□ -1.04
LIMA1-211ENST00000552338 WLSQ5T9L3 541 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 SLX4IPQ5VYV7 408 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 C12orf73Q69YU5 71 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 GPR139Q6DWJ6 353 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 HIST3H2AQ7L7L0 130 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 DHRSXQ8N5I4 330 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 TMEM99Q8N816 258 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 OR8D4Q8NGM9 314 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 ZNF417Q8TAU3 575 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 FAM57AQ8TBR7 257 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 RNF128Q8TEB7 428 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 FBLIM1Q8WUP2 373 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 TRUB1Q8WWH5 349 aaKnown RBP8.56□□□□□ -1.04
LIMA1-211ENST00000552338 HIST1H2ACQ93077 130 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 GTPBP3Q969Y2 492 aaKnown RBP8.56□□□□□ -1.04
LIMA1-211ENST00000552338 ZHX1-C8orf76Q96EF9 292 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 ZNF587Q96SQ5 575 aaPredicted RBP8.56□□□□□ -1.04
LIMA1-211ENST00000552338 MBOAT4Q96T53 435 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 DDOQ99489 341 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 SRXN1Q9BYN0 137 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 PLA2G12AQ9BZM1 189 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 ENKD1Q9H0I2 346 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 BCO1Q9HAY6 547 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 GLRX2Q9NS18 164 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 ASF1BQ9NVP2 202 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 KIF17Q9P2E2 1029 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 CLCF1Q9UBD9 225 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 RAB26Q9ULW5 256 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 ORC6Q9Y5N6 252 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 NOX1Q9Y5S8 564 aa8.56□□□□□ -1.04
LIMA1-211ENST00000552338 TRAV27A0A087WT01 109 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 LOC100130705A0A1B0GUX0 176 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 MBD3L4A6NDZ8 208 aaPredicted RBP8.55□□□□□ -1.04
LIMA1-211ENST00000552338 MBD3L3A6NE82 208 aaPredicted RBP8.55□□□□□ -1.04
LIMA1-211ENST00000552338 MBD3L5A6NJ08 208 aaPredicted RBP8.55□□□□□ -1.04
LIMA1-211ENST00000552338 ZNF716A6NP11 495 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 ZNF724A8MTY0 619 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 ZNF814B7Z6K7 855 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 H0YC42 278 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 EIF1AYO14602 144 aaKnown RBP8.55□□□□□ -1.04
LIMA1-211ENST00000552338 DENRO43583 198 aaKnown RBP8.55□□□□□ -1.04
LIMA1-211ENST00000552338 CXCL13O43927 109 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 AKR7A3O95154 331 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 ENPP1P22413 925 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 SLC6A6P31641 620 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 GRK5P34947 590 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 PTGS2P35354 604 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 TIMP3P35625 211 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 POLR2IP36954 125 aaKnown RBP8.55□□□□□ -1.04
LIMA1-211ENST00000552338 AQP2P41181 271 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 ZNF133P52736 654 aaPredicted RBP8.55□□□□□ -1.04
LIMA1-211ENST00000552338 SMSP52788 366 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 AQP4P55087 323 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 TPD52P55327 224 aaPredicted RBP8.55□□□□□ -1.04
LIMA1-211ENST00000552338 OR2B6P58173 313 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 TEKQ02763 1124 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 PMS2P3Q13401 168 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 RNPS1Q15287 305 aaKnown RBP8.55□□□□□ -1.04
LIMA1-211ENST00000552338 GUSBP1Q15486 140 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 GXYLT1Q4G148 440 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 ALG10Q5BKT4 473 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 NSUN5P2Q63ZY6 315 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 GTF2IRD2BQ6EKJ0 949 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 SLC27A4Q6P1M0 643 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 THSD4Q6ZMP0 1018 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 NANOGNBQ7Z5D8 188 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 GTF2IRD2Q86UP8 949 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 GALNT4Q8N4A0 578 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 ST6GALNAC3Q8NDV1 305 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 ATP6V1C2Q8NEY4 427 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 ANKK1Q8NFD2 765 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 OR13C2Q8NGS9 318 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 MBD3L2Q8NHZ7 208 aaPredicted RBP8.55□□□□□ -1.04
LIMA1-211ENST00000552338 WNT2BQ93097 391 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 TMEM45BQ96B21 275 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 ZNF184Q99676 751 aaPredicted RBP8.55□□□□□ -1.04
LIMA1-211ENST00000552338 TUBA1CQ9BQE3 449 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 TACO1Q9BSH4 297 aaKnown RBP8.55□□□□□ -1.04
LIMA1-211ENST00000552338 ADI1Q9BV57 179 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms