RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 SNX8Q9Y5X2 465 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 FREM3P0C091 2139 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 MED12LQ86YW9 2145 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 MALRD1Q5VYJ5 2156 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 CSMD3Q7Z407 3707 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 COL7A1Q02388 2944 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 A0A0J9YW62 118 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 GOLGA6L10A6NI86 522 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 FAM159BA6NKW6 160 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 E7EQL1 145 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 OR7A17O14581 309 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 SEC14L5O43304 696 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 EFNA2O43921 213 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 CXCL13O43927 109 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 ERAL1O75616 437 aaKnown RBP3.09□□□□□ -1.91
LIMA1-206ENST00000550611 PSMG1O95456 288 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 ADAP00813 363 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 MBPP02686 304 aaPredicted RBP3.09□□□□□ -1.91
LIMA1-206ENST00000550611 TUBBP07437 444 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 LYL1P12980 280 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 APEHP13798 732 aaKnown RBP3.09□□□□□ -1.91
LIMA1-206ENST00000550611 CHN1P15882 459 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 STMN1P16949 149 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 ZNF17P17021 662 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 PTNP21246 168 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 DUSP1P28562 367 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 AGTR1P30556 359 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 EVI2BP34910 448 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 PGM1P36871 562 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 MAP3K8P41279 467 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 NUDT6P53370 316 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 SLC12A2P55011 1212 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 CTBP2P56545 445 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 RAB10P61026 200 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 TRA2BP62995 288 aaKnown RBP3.09□□□□□ -1.91
LIMA1-206ENST00000550611 PHEXP78562 749 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 MRPS22P82650 360 aaKnown RBP3.09□□□□□ -1.91
LIMA1-206ENST00000550611 ITGADQ13349 1161 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 GTF2H2Q13888 395 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 SQLEQ14534 574 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 KPNB1Q14974 876 aaKnown RBP3.09□□□□□ -1.91
LIMA1-206ENST00000550611 FASTKD3Q14CZ7 662 aaKnown RBP3.09□□□□□ -1.91
LIMA1-206ENST00000550611 P2RY6Q15077 328 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 SGCBQ16585 318 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 AWAT1Q58HT5 328 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 CCNYL2Q5T2Q4 361 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 INTS11Q5TA45 600 aaKnown RBP3.09□□□□□ -1.91
LIMA1-206ENST00000550611 CPTPQ5TA50 214 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 C6orf163Q5TEZ5 329 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 AGAP6Q5VW22 663 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 RAET1LQ5VY80 246 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 FAM166AQ6J272 317 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 FAM180BQ6P0A1 224 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 GTF2H2CQ6P1K8 395 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 CLEC2AQ6UVW9 174 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 TFAP2EQ6VUC0 442 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 COMMD6Q7Z4G1 85 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 GALNT10Q86SR1 603 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 MARCH3Q86UD3 253 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 TDRPQ86YL5 185 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 PDIK1LQ8N165 341 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 GTPBP8Q8N3Z3 284 aaPredicted RBP3.09□□□□□ -1.91
LIMA1-206ENST00000550611 RFLNBQ8N5W9 214 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 ZNF525Q8N782 197 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 PTGR2Q8N8N7 351 aaPredicted RBP3.09□□□□□ -1.91
LIMA1-206ENST00000550611 FBXO36Q8NEA4 188 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 OR10D3Q8NH80 312 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 OR2V1Q8NHB1 315 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 RHEBL1Q8TAI7 183 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 ACTRT1Q8TDG2 376 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 GRK7Q8WTQ7 553 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 ZFAND2BQ8WV99 257 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 OSTF1Q92882 214 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 ITFG2Q969R8 447 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 EFHD2Q96C19 240 aaPredicted RBP3.09□□□□□ -1.91
LIMA1-206ENST00000550611 NXNL1Q96CM4 212 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 ZMYND19Q96E35 227 aaPredicted RBP3.09□□□□□ -1.91
LIMA1-206ENST00000550611 RBMXL1Q96E39 390 aaKnown RBP3.09□□□□□ -1.91
LIMA1-206ENST00000550611 RADILQ96JH8 1075 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 ADAD1Q96M93 576 aaKnown RBP3.09□□□□□ -1.91
LIMA1-206ENST00000550611 RBBP8Q99708 897 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 KLHDC3Q9BQ90 382 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 CACNG6Q9BXT2 260 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 MRPL1Q9BYD6 325 aaKnown RBP3.09□□□□□ -1.91
LIMA1-206ENST00000550611 ZNF696Q9H7X3 374 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 PTGES2Q9H7Z7 377 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 FOLH1BQ9HBA9 442 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 NMRAL1Q9HBL8 299 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 KCNK9Q9NPC2 374 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 NGBQ9NPG2 151 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP3.09□□□□□ -1.91
LIMA1-206ENST00000550611 SDHAF3Q9NRP4 125 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 CBLN4Q9NTU7 201 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 FAM120CQ9NX05 1096 aaKnown RBP3.09□□□□□ -1.91
LIMA1-206ENST00000550611 NSMCE4AQ9NXX6 385 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 NPAP1Q9NZP6 1156 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 SLC13A4Q9UKG4 626 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 PSME2Q9UL46 239 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 KCNS2Q9ULS6 477 aa3.09□□□□□ -1.91
LIMA1-206ENST00000550611 ABCG2Q9UNQ0 655 aa3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms