RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 ACTRT3Q9BYD9 372 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 DHDHQ9UQ10 334 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 SBK2P0C263 348 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 ZNF28P17035 718 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 ETFDHQ16134 617 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 SLC29A4Q7RTT9 530 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 GDF7Q7Z4P5 450 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 ACBD4Q8NC06 268 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 SCMH1Q96GD3 660 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 OR1F2PQ96R84 312 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 CHRDQ9H2X0 955 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 IL21RQ9HBE5 538 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 A0A1W2PP55 124 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 TUBAL3A6NHL2 446 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 SYT5O00445 386 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 GAPDHSO14556 408 aaPredicted RBP13.17□□□□□ -0.3
LIMS1-215ENST00000544547 SIGLEC6O43699 453 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 IFNA17P01571 189 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 IGLV3-27P01718 113 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 THEGLP0DJG4 465 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 SLC6A9P48067 706 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 CAMLGP49069 296 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 AGFG1P52594 562 aaKnown RBP13.17□□□□□ -0.3
LIMS1-215ENST00000544547 IRF5Q13568 498 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 DECR1Q16698 335 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 EOGTQ5NDL2 527 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 OR14K1Q8NGZ2 314 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 YIPF5Q969M3 257 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 TM4SF18Q96CE8 201 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 LTBP1Q14766 1721 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 NTN1O95631 604 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 IGF2P01344 180 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 MAOAP21397 527 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 HOXC12P31275 282 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 CSF2RBP32927 897 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 KCNJ3P48549 501 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 PLA1AQ53H76 456 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 STEAP1BQ6NZ63 245 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 C1orf94Q6P1W5 598 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 SMIM4Q8WVI0 70 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 ISYNA1Q9NPH2 558 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 CA5BQ9Y2D0 317 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 SLC22A23A1A5C7 686 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 BET1O15155 118 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 DOK2O60496 412 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 HOXD4P09016 255 aaPredicted RBP13.16□□□□□ -0.3
LIMS1-215ENST00000544547 EPXP11678 715 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 HMGA2P52926 109 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 CHAF1BQ13112 559 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 CLINT1Q14677 625 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 OR4Q3Q8NH05 313 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 TMEM106AQ96A25 262 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 KLHDC7BQ96G42 594 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 KCNJ16Q9NPI9 418 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 MEPEQ9NQ76 525 aaPredicted RBP13.16□□□□□ -0.3
LIMS1-215ENST00000544547 MED17Q9NVC6 651 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 KLHL42Q9P2K6 505 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 ASH2LQ9UBL3 628 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 RP1P56715 2156 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 TMEM72A0PK05 275 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 STMND1H3BQB6 276 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 FOXE1O00358 373 aaPredicted RBP13.16□□□□□ -0.3
LIMS1-215ENST00000544547 PLPP1O14494 284 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 MAGEB1P43366 347 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 MMP15P51511 669 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 ELAVL3Q14576 367 aaKnown RBP13.16□□□□□ -0.3
LIMS1-215ENST00000544547 EIF2S3LQ2VIR3 472 aaKnown RBP13.16□□□□□ -0.3
LIMS1-215ENST00000544547 PHF19Q5T6S3 580 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 RPL22L1Q6P5R6 122 aaKnown RBP13.16□□□□□ -0.3
LIMS1-215ENST00000544547 NRROSQ86YC3 692 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 DEFB119Q8N690 84 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 LMX1AQ8TE12 382 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 SLC25A44Q96H78 314 aaPredicted RBP13.16□□□□□ -0.3
LIMS1-215ENST00000544547 ACKR4Q9NPB9 350 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 SDHAF3Q9NRP4 125 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 ZNF223Q9UK11 482 aaPredicted RBP13.16□□□□□ -0.3
LIMS1-215ENST00000544547 ZNF281Q9Y2X9 895 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 OR5K3A6NET4 321 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 POM121BA6NF01 834 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 TRIM77I1YAP6 450 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 NDUFB2O95178 105 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 KNG1P01042 644 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 SERPINA5P05154 406 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 OR1Q1Q15612 314 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 LTB4RQ15722 352 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 AKR1C8PQ5T2L2 129 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 PFN4Q8NHR9 129 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 MOAP1Q96BY2 351 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 SLC25A32Q9H2D1 315 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 GHITMQ9H3K2 345 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 POFUT1Q9H488 388 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 ZFP64Q9NPA5 681 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 HCFC1R1Q9NWW0 138 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 A4GNTQ9UNA3 340 aa13.16□□□□□ -0.3
LIMS1-215ENST00000544547 A0A0A6YYH2 397 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 OR5H14A6NHG9 310 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 A6NJ64 397 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 TMEM200CA6NKL6 621 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 SULT1A3P0DMM9 295 aa13.15□□□□□ -0.3
LIMS1-215ENST00000544547 SULT1A4P0DMN0 295 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms