RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	PROS1	P07225	676 aa		13.51	□□□□□ -0.25
DDX55-209	ENST00000542286	SLC6A1	P30531	599 aa		13.51	□□□□□ -0.25
DDX55-209	ENST00000542286	ZNF81	P51508	661 aa		13.51	□□□□□ -0.25
DDX55-209	ENST00000542286	MAP2K6	P52564	334 aa		13.51	□□□□□ -0.25
DDX55-209	ENST00000542286	RTL4	Q6ZR62	310 aa		13.51	□□□□□ -0.25
DDX55-209	ENST00000542286	ADGRG3	Q86Y34	549 aa		13.51	□□□□□ -0.25
DDX55-209	ENST00000542286	MOGAT1	Q96PD6	335 aa		13.51	□□□□□ -0.25
DDX55-209	ENST00000542286	UBQLN2	Q9UHD9	624 aa		13.51	□□□□□ -0.25
DDX55-209	ENST00000542286	MPC2	O95563	127 aa		13.5	□□□□□ -0.25
DDX55-209	ENST00000542286	MT-ND5	P03915	603 aa		13.5	□□□□□ -0.25
DDX55-209	ENST00000542286	SNRPB	P14678	240 aa	Known RBP	13.5	□□□□□ -0.25
DDX55-209	ENST00000542286	RAB14	P61106	215 aa		13.5	□□□□□ -0.25
DDX55-209	ENST00000542286	ACSM3	Q53FZ2	586 aa		13.5	□□□□□ -0.25
DDX55-209	ENST00000542286	MED25	Q71SY5	747 aa		13.5	□□□□□ -0.25
DDX55-209	ENST00000542286	ZNF511	Q8NB15	262 aa		13.5	□□□□□ -0.25
DDX55-209	ENST00000542286	CEP76	Q8TAP6	659 aa		13.5	□□□□□ -0.25
DDX55-209	ENST00000542286	HSD17B8	Q92506	261 aa		13.5	□□□□□ -0.25
DDX55-209	ENST00000542286	RBPMS	Q93062	196 aa	Known RBP	13.5	□□□□□ -0.25
DDX55-209	ENST00000542286	GAL3ST4	Q96RP7	486 aa		13.5	□□□□□ -0.25
DDX55-209	ENST00000542286	LMF2	Q9BU23	707 aa	Known RBP	13.5	□□□□□ -0.25
DDX55-209	ENST00000542286		Q9N2J8	555 aa		13.5	□□□□□ -0.25
DDX55-209	ENST00000542286	SLCO1C1	Q9NYB5	712 aa		13.5	□□□□□ -0.25
DDX55-209	ENST00000542286	RDH8	Q9NYR8	311 aa		13.5	□□□□□ -0.25
DDX55-209	ENST00000542286	GNG8	Q9UK08	70 aa		13.5	□□□□□ -0.25
DDX55-209	ENST00000542286	TRAV6	A0A075B6T7	132 aa		13.5	□□□□□ -0.25
DDX55-209	ENST00000542286	C17orf105	B2RV13	164 aa		13.5	□□□□□ -0.25
DDX55-209	ENST00000542286	CHURC1-FNTB	B4DL54	471 aa		13.5	□□□□□ -0.25
DDX55-209	ENST00000542286	CTNS	O60931	367 aa		13.5	□□□□□ -0.25
DDX55-209	ENST00000542286	STOM	P27105	288 aa		13.5	□□□□□ -0.25
DDX55-209	ENST00000542286	THBS2	P35442	1172 aa		13.5	□□□□□ -0.25
DDX55-209	ENST00000542286	AQP2	P41181	271 aa		13.5	□□□□□ -0.25
DDX55-209	ENST00000542286	FNTB	P49356	437 aa		13.5	□□□□□ -0.25
DDX55-209	ENST00000542286	ZMYND11	Q15326	602 aa		13.5	□□□□□ -0.25
DDX55-209	ENST00000542286	STK11	Q15831	433 aa		13.5	□□□□□ -0.25
DDX55-209	ENST00000542286	LGALSL	Q3ZCW2	172 aa	Predicted RBP	13.5	□□□□□ -0.25
DDX55-209	ENST00000542286	TSTD1	Q8NFU3	115 aa		13.5	□□□□□ -0.25
DDX55-209	ENST00000542286		Q96M85	177 aa		13.5	□□□□□ -0.25
DDX55-209	ENST00000542286	OR14A2	Q96R54	314 aa		13.5	□□□□□ -0.25
DDX55-209	ENST00000542286	ZNF426	Q9BUY5	554 aa		13.5	□□□□□ -0.25
DDX55-209	ENST00000542286	FOXQ1	Q9C009	403 aa		13.5	□□□□□ -0.25
DDX55-209	ENST00000542286	EMC7	Q9NPA0	242 aa		13.5	□□□□□ -0.25
DDX55-209	ENST00000542286	CHRNA9	Q9UGM1	479 aa		13.5	□□□□□ -0.25
DDX55-209	ENST00000542286		A0A1B0GTH9	108 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	KHNYN	O15037	678 aa	Known RBP	13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	CFD	P00746	253 aa	Predicted RBP	13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	CLPS	P04118	112 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	ANXA3	P12429	323 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	CXCL3	P19876	107 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	CAPZB	P47756	277 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	ATP12A	P54707	1039 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	SFXN4	Q6P4A7	337 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	ZCCHC12	Q6PEW1	402 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	ZSCAN1	Q8NBB4	408 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	PHOSPHO1	Q8TCT1	267 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	PELI1	Q96FA3	418 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	RBP7	Q96R05	134 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	NXF5	Q9H1B4	397 aa	Known RBP	13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	SLC25A18	Q9H1K4	315 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	LMAN1L	Q9HAT1	526 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	ING1	Q9UK53	422 aa	Predicted RBP	13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	AK6	Q9Y3D8	172 aa	Known RBP	13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	MTCH2	Q9Y6C9	303 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	IGKV1D-42	A0A075B6H8	117 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	IGHV1OR15-9	A0A0B4J2B8	117 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	SERINC4	A6NH21	518 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	OR5K4	A6NMS3	321 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	EEF1E1	O43324	174 aa	Known RBP	13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	FMO6P	O60774	539 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	PPM1B	O75688	479 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	DHFR	P00374	187 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	PTBP1	P26599	531 aa	Known RBP eCLIP	13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	MST1	P26927	711 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	SLC6A6	P31641	620 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	ACSM1	Q08AH1	577 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	ODF4	Q2M2E3	257 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	TMEM44	Q2T9K0	475 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	PLA1A	Q53H76	456 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	C1orf189	Q5VU69	101 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	LUZP2	Q86TE4	346 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	GPR135	Q8IZ08	494 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	C3orf49	Q96BT1	292 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	KLHL15	Q96M94	604 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	ZNF578	Q96N58	590 aa	Predicted RBP	13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	ABHD1	Q96SE0	405 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286		A0A0G2JK05	382 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	TEX13C	A0A0J9YWL9	993 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	DCTN6	O00399	190 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	RPP14	O95059	124 aa	Known RBP	13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	CFL1	P23528	166 aa	Known RBP	13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	CD1C	P29017	333 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	BAMBI	Q13145	260 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	VWA2	Q5GFL6	755 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	C1QL3	Q5VWW1	255 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	ULK3	Q6PHR2	472 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	ZSCAN2	Q7Z7L9	614 aa	Predicted RBP	13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	FAM174A	Q8TBP5	190 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	FBXW5	Q969U6	566 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	SGTB	Q96EQ0	304 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	ADO	Q96SZ5	270 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	NKX3-1	Q99801	234 aa	Predicted RBP	13.49	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms