RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 ZNF621Q6ZSS3 439 aa11.75□□□□□ -0.53
SS18-204ENST00000539244 TUBA1AQ71U36 451 aa11.75□□□□□ -0.53
SS18-204ENST00000539244 MYPOPQ86VE0 399 aaPredicted RBP11.75□□□□□ -0.53
SS18-204ENST00000539244 MEX3DQ86XN8 651 aaKnown RBP11.75□□□□□ -0.53
SS18-204ENST00000539244 CADM2Q8N3J6 435 aa11.75□□□□□ -0.53
SS18-204ENST00000539244 LINC01356Q8N9X3 169 aa11.75□□□□□ -0.53
SS18-204ENST00000539244 PNPT1Q8TCS8 783 aaKnown RBP11.75□□□□□ -0.53
SS18-204ENST00000539244 ANKRD27Q96NW4 1050 aa11.75□□□□□ -0.53
SS18-204ENST00000539244 OR52E6Q96RD3 313 aa11.75□□□□□ -0.53
SS18-204ENST00000539244 PTDSS2Q9BVG9 487 aa11.75□□□□□ -0.53
SS18-204ENST00000539244 SSU72Q9NP77 194 aaKnown RBP11.75□□□□□ -0.53
SS18-204ENST00000539244 TMEFF2Q9UIK5 374 aaPredicted RBP11.75□□□□□ -0.53
SS18-204ENST00000539244 ZNF443Q9Y2A4 671 aaPredicted RBP11.75□□□□□ -0.53
SS18-204ENST00000539244 CHST2Q9Y4C5 530 aa11.75□□□□□ -0.53
SS18-204ENST00000539244 PCDHB14Q9Y5E9 798 aa11.75□□□□□ -0.53
SS18-204ENST00000539244 GPR45Q9Y5Y3 372 aa11.75□□□□□ -0.53
SS18-204ENST00000539244 IGHV2OR16-5A0A0B4J2B6 119 aa11.74□□□□□ -0.53
SS18-204ENST00000539244 TM9SF1O15321 606 aa11.74□□□□□ -0.53
SS18-204ENST00000539244 AHSA1O95433 338 aa11.74□□□□□ -0.53
SS18-204ENST00000539244 GSNP06396 782 aa11.74□□□□□ -0.53
SS18-204ENST00000539244 CELA3BP08861 270 aa11.74□□□□□ -0.53
SS18-204ENST00000539244 PNMTP11086 282 aa11.74□□□□□ -0.53
SS18-204ENST00000539244 PRG2P13727 222 aa11.74□□□□□ -0.53
SS18-204ENST00000539244 ARR3P36575 388 aa11.74□□□□□ -0.53
SS18-204ENST00000539244 CRISP3P54108 245 aa11.74□□□□□ -0.53
SS18-204ENST00000539244 CDH15P55291 814 aa11.74□□□□□ -0.53
SS18-204ENST00000539244 VSNL1P62760 191 aa11.74□□□□□ -0.53
SS18-204ENST00000539244 EGR4Q05215 589 aa11.74□□□□□ -0.53
SS18-204ENST00000539244 CCDC36Q8IYA8 594 aa11.74□□□□□ -0.53
SS18-204ENST00000539244 CLIP4Q8N3C7 705 aa11.74□□□□□ -0.53
SS18-204ENST00000539244 SVOPLQ8N434 492 aa11.74□□□□□ -0.53
SS18-204ENST00000539244 GLB1L3Q8NCI6 653 aaPredicted RBP11.74□□□□□ -0.53
SS18-204ENST00000539244 IL17RDQ8NFM7 739 aa11.74□□□□□ -0.53
SS18-204ENST00000539244 SLC38A5Q8WUX1 472 aa11.74□□□□□ -0.53
SS18-204ENST00000539244 SLC35B4Q969S0 331 aa11.74□□□□□ -0.53
SS18-204ENST00000539244 SPATA9Q9BWV2 254 aa11.74□□□□□ -0.53
SS18-204ENST00000539244 B3GAT1Q9P2W7 334 aa11.74□□□□□ -0.53
SS18-204ENST00000539244 ZNF503-AS2A6NEH8 195 aa11.73□□□□□ -0.53
SS18-204ENST00000539244 SDHDO14521 159 aa11.73□□□□□ -0.53
SS18-204ENST00000539244 RFXANKO14593 260 aa11.73□□□□□ -0.53
SS18-204ENST00000539244 ZCCHC18P0CG32 403 aa11.73□□□□□ -0.53
SS18-204ENST00000539244 ZNF43P17038 809 aa11.73□□□□□ -0.53
SS18-204ENST00000539244 ITGA2P17301 1181 aa11.73□□□□□ -0.53
SS18-204ENST00000539244 PCMT1P22061 227 aa11.73□□□□□ -0.53
SS18-204ENST00000539244 APEX1P27695 318 aaKnown RBP11.73□□□□□ -0.53
SS18-204ENST00000539244 DVL1P1P54792 670 aaPredicted RBP11.73□□□□□ -0.53
SS18-204ENST00000539244 NME5P56597 212 aa11.73□□□□□ -0.53
SS18-204ENST00000539244 CLDN17P56750 224 aa11.73□□□□□ -0.53
SS18-204ENST00000539244 ARF1P84077 181 aaKnown RBP11.73□□□□□ -0.53
SS18-204ENST00000539244 LARS2Q15031 903 aaKnown RBP11.73□□□□□ -0.53
SS18-204ENST00000539244 ADRM1Q16186 407 aa11.73□□□□□ -0.53
SS18-204ENST00000539244 C6orf89Q6UWU4 347 aa11.73□□□□□ -0.53
SS18-204ENST00000539244 DEF8Q6ZN54 512 aa11.73□□□□□ -0.53
SS18-204ENST00000539244 SPATA21Q7Z572 469 aa11.73□□□□□ -0.53
SS18-204ENST00000539244 SERPINA11Q86U17 422 aa11.73□□□□□ -0.53
SS18-204ENST00000539244 ZCCHC24Q8N2G6 241 aaKnown RBP11.73□□□□□ -0.53
SS18-204ENST00000539244 UBASH3BQ8TF42 649 aa11.73□□□□□ -0.53
SS18-204ENST00000539244 AENQ8WTP8 325 aaKnown RBP11.73□□□□□ -0.53
SS18-204ENST00000539244 OXGR1Q96P68 337 aa11.73□□□□□ -0.53
SS18-204ENST00000539244 SNX18Q96RF0 628 aa11.73□□□□□ -0.53
SS18-204ENST00000539244 ARMC7Q9H6L4 198 aa11.73□□□□□ -0.53
SS18-204ENST00000539244 GPR35Q9HC97 309 aa11.73□□□□□ -0.53
SS18-204ENST00000539244 SLC6A13Q9NSD5 602 aa11.73□□□□□ -0.53
SS18-204ENST00000539244 A0A0G2JPF8 293 aa11.72□□□□□ -0.53
SS18-204ENST00000539244 LOC102725191A0A1B0GVB3 256 aa11.72□□□□□ -0.53
SS18-204ENST00000539244 HNRNPCL2B2RXH8 293 aa11.72□□□□□ -0.53
SS18-204ENST00000539244 HNRNPCL3B7ZW38 293 aa11.72□□□□□ -0.53
SS18-204ENST00000539244 HNRNPCL1O60812 293 aaKnown RBP11.72□□□□□ -0.53
SS18-204ENST00000539244 SLC43A1O75387 559 aa11.72□□□□□ -0.53
SS18-204ENST00000539244 IL6P05231 212 aa11.72□□□□□ -0.53
SS18-204ENST00000539244 BCHEP06276 602 aa11.72□□□□□ -0.53
SS18-204ENST00000539244 HNRNPCL4P0DMR1 293 aa11.72□□□□□ -0.53
SS18-204ENST00000539244 ETFAP13804 333 aa11.72□□□□□ -0.53
SS18-204ENST00000539244 NCF2P19878 526 aaPredicted RBP11.72□□□□□ -0.53
SS18-204ENST00000539244 SRP14P37108 136 aaKnown RBP11.72□□□□□ -0.53
SS18-204ENST00000539244 EVX1P49640 407 aa11.72□□□□□ -0.53
SS18-204ENST00000539244 CEACAM16Q2WEN9 425 aa11.72□□□□□ -0.53
SS18-204ENST00000539244 CDK20Q8IZL9 346 aa11.72□□□□□ -0.53
SS18-204ENST00000539244 KDM8Q8N371 416 aa11.72□□□□□ -0.53
SS18-204ENST00000539244 CKAP2Q8WWK9 683 aa11.72□□□□□ -0.53
SS18-204ENST00000539244 ZNF837Q96EG3 531 aaPredicted RBP11.72□□□□□ -0.53
SS18-204ENST00000539244 ZBTB18Q99592 522 aa11.72□□□□□ -0.53
SS18-204ENST00000539244 TPT1P8Q9HAU6 139 aa11.72□□□□□ -0.53
SS18-204ENST00000539244 C12orf10Q9HB07 376 aa11.72□□□□□ -0.53
SS18-204ENST00000539244 NOX3Q9HBY0 568 aa11.72□□□□□ -0.53
SS18-204ENST00000539244 DYNLRB1Q9NP97 96 aa11.72□□□□□ -0.53
SS18-204ENST00000539244 PNPOQ9NVS9 261 aa11.72□□□□□ -0.53
SS18-204ENST00000539244 THUMPD1Q9NXG2 353 aaKnown RBP11.72□□□□□ -0.53
SS18-204ENST00000539244 ZNF232Q9UNY5 417 aa11.72□□□□□ -0.53
SS18-204ENST00000539244 IFT52Q9Y366 437 aa11.72□□□□□ -0.53
SS18-204ENST00000539244 A0A0A6YYJ9 748 aa11.71□□□□□ -0.53
SS18-204ENST00000539244 ZNF99A8MXY4 864 aaPredicted RBP11.71□□□□□ -0.53
SS18-204ENST00000539244 SLCO1B7G3V0H7 640 aa11.71□□□□□ -0.53
SS18-204ENST00000539244 IFNGR1P15260 489 aa11.71□□□□□ -0.53
SS18-204ENST00000539244 BGNP21810 368 aa11.71□□□□□ -0.53
SS18-204ENST00000539244 NR4A1P22736 598 aa11.71□□□□□ -0.53
SS18-204ENST00000539244 CRATP43155 626 aa11.71□□□□□ -0.53
SS18-204ENST00000539244 RPS5P46782 204 aaKnown RBP11.71□□□□□ -0.53
SS18-204ENST00000539244 DSTNP60981 165 aa11.71□□□□□ -0.53
SS18-204ENST00000539244 BST1Q10588 318 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms