RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 SPHARQ15513 63 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 INAQ16352 499 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 MOGQ16653 247 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 TMEM44Q2T9K0 475 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 AADACL4Q5VUY2 407 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 SMARCD3Q6STE5 483 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 PAQR6Q6TCH4 344 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 ZNF440Q8IYI8 595 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 GATSQ8NAP1 163 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 FAM71CQ8NEG0 241 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 PROKR2Q8NFJ6 384 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 OIT3Q8WWZ8 545 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 RFKQ969G6 155 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 PLGRKTQ9HBL7 147 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 COPS7AQ9UBW8 275 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 ITGB1BP2Q9UKP3 347 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 YARS2Q9Y2Z4 477 aaKnown RBP10.8□□□□□ -0.68
CLIP1-208ENST00000537004 NOTCH2Q04721 2471 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 TRAV27A0A087WT01 109 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 NPIPA5E9PKD4 350 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 CCRL2O00421 344 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 SCDO00767 359 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 GNB5O14775 395 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 NME2P1O60361 137 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 APOL3O95236 402 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 SCG5P05408 212 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 NME2P22392 152 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 ADH7P40394 386 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 ETV1P50549 477 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 COPZ1P61923 177 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 DCAF7P61962 342 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 C1DQ13901 141 aaKnown RBP10.8□□□□□ -0.68
CLIP1-208ENST00000537004 CD226Q15762 336 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 DGUOKQ16854 277 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 FNDC7Q5VTL7 733 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 HLA-DQA1Q5Y7H0 255 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 HIST2H2BCQ6DN03 193 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 GFRALQ6UXV0 394 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 THSD4Q6ZMP0 1018 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 Q6ZNX1 250 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 SULF2Q8IWU5 870 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 PRR22Q8IZ63 422 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 LNX2Q8N448 690 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 TMEM178AQ8NBL3 297 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 BBS1Q8NFJ9 593 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 OR51A7Q8NH64 312 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 DNAJA4Q8WW22 397 aaPredicted RBP10.8□□□□□ -0.68
CLIP1-208ENST00000537004 OPALINQ96PE5 141 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 PSMG3-AS1Q96PY0 264 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 TAPBPLQ9BX59 468 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 RACGAP1Q9H0H5 632 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 OR51E2Q9H255 320 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 DCSTAMPQ9H295 470 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 FGF20Q9NP95 211 aaPredicted RBP10.8□□□□□ -0.68
CLIP1-208ENST00000537004 HINT3Q9NQE9 182 aaKnown RBP10.8□□□□□ -0.68
CLIP1-208ENST00000537004 DEPPQ9NTK1 212 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 NPIPA1Q9UND3 350 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 CARD8Q9Y2G2 431 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 PCDHGB6Q9Y5F9 930 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 NAV2Q8IVL1 2488 aa10.8□□□□□ -0.68
CLIP1-208ENST00000537004 A0A0G2JMM0 328 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 LOC100506127A0A0U1RQW1 187 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 A0A1W2PPB8 328 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 A0A1W2PRS3 328 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 A1L4Q6 167 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 KIR3DP1A8MWS1 328 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 LRRTM2O43300 516 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 HCN1O60741 890 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 NADKO95544 446 aaPredicted RBP10.79□□□□□ -0.68
CLIP1-208ENST00000537004 CRYABP02511 175 aaKnown RBP10.79□□□□□ -0.68
CLIP1-208ENST00000537004 UBL4AP11441 157 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 MYL12AP19105 171 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 SERPINB10P48595 397 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 HSF1Q00613 529 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 CRYZQ08257 329 aaKnown RBP10.79□□□□□ -0.68
CLIP1-208ENST00000537004 SKP2Q13309 424 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 SSX1Q16384 188 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 C1QL3Q5VWW1 255 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 NXNL2Q5VZ03 156 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 OAFQ86UD1 273 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 CPOQ8IVL8 374 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 PHOSPHO1Q8TCT1 267 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 ASB15Q8WXK1 588 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 ADOQ96SZ5 270 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 CHCHD6Q9BRQ6 235 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 IFT27Q9BW83 186 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 WWTR1Q9GZV5 400 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 TMEM165Q9HC07 324 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 HPF1Q9NWY4 346 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 SH3BGRL2Q9UJC5 107 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 UNC79Q9P2D8 2635 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 A0A087WUJ7 227 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 OIP5O43482 229 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 PTP4A3O75365 173 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 REM1O75628 298 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 IL12BP29460 328 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 UGT2B10P36537 528 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 BMXP51813 675 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 TUBA1BP68363 451 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 APOOLQ6UXV4 268 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms