RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 PRRT3Q5FWE3 981 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 ZC3H14Q6PJT7 736 aaKnown RBP13.03□□□□□ -0.32
USP48-213ENST00000529637 FRRS1Q6ZNA5 592 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 MCATQ8IVS2 390 aaKnown RBP13.03□□□□□ -0.32
USP48-213ENST00000529637 ZNF433Q8N7K0 673 aaPredicted RBP13.03□□□□□ -0.32
USP48-213ENST00000529637 RPP25Q9BUL9 199 aaKnown RBP13.03□□□□□ -0.32
USP48-213ENST00000529637 C1QTNF2Q9BXJ5 285 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 PBX4Q9BYU1 374 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 ACTR10Q9NZ32 417 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 SLC17A4Q9Y2C5 497 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 SLC6A5Q9Y345 797 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 PRSS38A1L453 326 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 GPR31O00270 319 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 GOSR2O14653 212 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 PTH2RP49190 550 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 PPP2CBP62714 309 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 PPP2CAP67775 309 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 UBE2NLQ5JXB2 153 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 SLC6A19Q695T7 634 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 COX18Q8N8Q8 333 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 GRHL3Q8TE85 626 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 GAL3ST3Q96A11 431 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 MTHFD2LQ9H903 347 aaPredicted RBP13.03□□□□□ -0.32
USP48-213ENST00000529637 ZNF275Q9NSD4 429 aaPredicted RBP13.03□□□□□ -0.32
USP48-213ENST00000529637 COA4Q9NYJ1 87 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 GDE1Q9NZC3 331 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 ANKRD61A6NGH8 418 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 B3GALT2O43825 422 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 KRT33AO76009 404 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 GLAP06280 429 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 PRKAR1BP31321 381 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 HOXA1P49639 335 aaPredicted RBP13.03□□□□□ -0.32
USP48-213ENST00000529637 SORDQ00796 357 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 ZNF836Q6ZNA1 936 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 RANBP3LQ86VV4 465 aaPredicted RBP13.03□□□□□ -0.32
USP48-213ENST00000529637 NAXDQ8IW45 347 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 PXT1Q8NFP0 134 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 FANK1Q8TC84 345 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 WDR13Q9H1Z4 485 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 KRCC1Q9NPI7 259 aaPredicted RBP13.03□□□□□ -0.32
USP48-213ENST00000529637 MED11Q9P086 117 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 KLHL9Q9P2J3 617 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 SDK1Q7Z5N4 2213 aa13.03□□□□□ -0.32
USP48-213ENST00000529637 ACOD1A6NK06 481 aa13.02□□□□□ -0.32
USP48-213ENST00000529637 MPTX1A8MV57 137 aa13.02□□□□□ -0.32
USP48-213ENST00000529637 GABARAPH6UMI1 98 aa13.02□□□□□ -0.32
USP48-213ENST00000529637 TMIGD3P0DMS9 266 aaPredicted RBP13.02□□□□□ -0.32
USP48-213ENST00000529637 PVRP15151 417 aa13.02□□□□□ -0.32
USP48-213ENST00000529637 FCARP24071 287 aa13.02□□□□□ -0.32
USP48-213ENST00000529637 PSMB10P40306 273 aa13.02□□□□□ -0.32
USP48-213ENST00000529637 PPM1FP49593 454 aaPredicted RBP13.02□□□□□ -0.32
USP48-213ENST00000529637 GDI2P50395 445 aaKnown RBP13.02□□□□□ -0.32
USP48-213ENST00000529637 LGALS3BPQ08380 585 aa13.02□□□□□ -0.32
USP48-213ENST00000529637 FGL1Q08830 312 aa13.02□□□□□ -0.32
USP48-213ENST00000529637 LRRN1Q6UXK5 716 aa13.02□□□□□ -0.32
USP48-213ENST00000529637 SHISA5Q8N114 240 aa13.02□□□□□ -0.32
USP48-213ENST00000529637 LINC00469Q8N7U9 141 aa13.02□□□□□ -0.32
USP48-213ENST00000529637 OR51A7Q8NH64 312 aa13.02□□□□□ -0.32
USP48-213ENST00000529637 OR1E3Q8WZA6 343 aa13.02□□□□□ -0.32
USP48-213ENST00000529637 TAS2R3Q9NYW6 316 aa13.02□□□□□ -0.32
USP48-213ENST00000529637 MLXQ9UH92 298 aa13.02□□□□□ -0.32
USP48-213ENST00000529637 HEBP2Q9Y5Z4 205 aa13.02□□□□□ -0.32
USP48-213ENST00000529637 TRAV1-2A0A0B4J238 106 aa13.02□□□□□ -0.33
USP48-213ENST00000529637 PIN1P1O15428 100 aa13.02□□□□□ -0.33
USP48-213ENST00000529637 PRICKLE3O43900 615 aaPredicted RBP13.02□□□□□ -0.33
USP48-213ENST00000529637 RPS15AP62244 130 aaKnown RBP13.02□□□□□ -0.33
USP48-213ENST00000529637 FOXK2Q01167 660 aa13.02□□□□□ -0.33
USP48-213ENST00000529637 CRMP1Q14194 572 aa13.02□□□□□ -0.33
USP48-213ENST00000529637 ITPRIPL2Q3MIP1 535 aa13.02□□□□□ -0.33
USP48-213ENST00000529637 ELFN2Q5R3F8 820 aa13.02□□□□□ -0.33
USP48-213ENST00000529637 OR4D10Q8NGI6 311 aa13.02□□□□□ -0.33
USP48-213ENST00000529637 BRIX1Q8TDN6 353 aaKnown RBP13.02□□□□□ -0.33
USP48-213ENST00000529637 FCAMRQ8WWV6 532 aa13.02□□□□□ -0.33
USP48-213ENST00000529637 CD180Q99467 661 aa13.02□□□□□ -0.33
USP48-213ENST00000529637 MTIF3Q9H2K0 278 aaKnown RBP13.02□□□□□ -0.33
USP48-213ENST00000529637 SIDT1Q9NXL6 827 aaKnown RBP13.02□□□□□ -0.33
USP48-213ENST00000529637 DENND4AQ7Z401 1863 aa13.02□□□□□ -0.33
USP48-213ENST00000529637 TMEM272A0A1B0GTI8 110 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 ANKRD20A5PA0PJZ0 165 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 HMSDA8MTL9 139 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 H7C2Y5 167 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 PEX12O00623 359 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 GNB5O14775 395 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 MPGP29372 298 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 P2RX1P51575 399 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 ADPRHP54922 357 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 TNFRSF17Q02223 184 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 PLA2G7Q13093 441 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 EXOSC7Q15024 291 aaKnown RBP13.01□□□□□ -0.33
USP48-213ENST00000529637 ZNF425Q6IV72 752 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 PELI1Q96FA3 418 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 MFFQ9GZY8 342 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 PLEKHA1Q9HB21 404 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 BARX1Q9HBU1 254 aaPredicted RBP13.01□□□□□ -0.33
USP48-213ENST00000529637 NOX4Q9NPH5 578 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 FBXO34Q9NWN3 711 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 TAS2R10Q9NYW0 307 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 PLCL2Q9UPR0 1127 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 TRAV27A0A087WT01 109 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 UNC119BA6NIH7 251 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms