RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 CLEC7AQ9BXN2 247 aa2.77□□□□□ -1.97
CD44-229ENST00000528672 DGCR6LQ9BY27 220 aa2.77□□□□□ -1.97
CD44-229ENST00000528672 IL22Q9GZX6 179 aa2.77□□□□□ -1.97
CD44-229ENST00000528672 OR2AG1Q9H205 316 aa2.77□□□□□ -1.97
CD44-229ENST00000528672 RHOJQ9H4E5 214 aa2.77□□□□□ -1.97
CD44-229ENST00000528672 NT5DC2Q9H857 520 aa2.77□□□□□ -1.97
CD44-229ENST00000528672 ANKRA2Q9H9E1 313 aa2.77□□□□□ -1.97
CD44-229ENST00000528672 SCRT2Q9NQ03 307 aa2.77□□□□□ -1.97
CD44-229ENST00000528672 DCAF13Q9NV06 445 aaKnown RBP2.77□□□□□ -1.97
CD44-229ENST00000528672 IMP3Q9NV31 184 aaKnown RBP2.77□□□□□ -1.97
CD44-229ENST00000528672 GID8Q9NWU2 228 aa2.77□□□□□ -1.97
CD44-229ENST00000528672 C2orf42Q9NWW7 574 aa2.77□□□□□ -1.97
CD44-229ENST00000528672 TAS2R16Q9NYV7 291 aa2.77□□□□□ -1.97
CD44-229ENST00000528672 MTCH1Q9NZJ7 389 aa2.77□□□□□ -1.97
CD44-229ENST00000528672 UVRAGQ9P2Y5 699 aa2.77□□□□□ -1.97
CD44-229ENST00000528672 PISDQ9UG56 409 aa2.77□□□□□ -1.97
CD44-229ENST00000528672 ABCG2Q9UNQ0 655 aa2.77□□□□□ -1.97
CD44-229ENST00000528672 GSTK1Q9Y2Q3 226 aa2.77□□□□□ -1.97
CD44-229ENST00000528672 MRPS18BQ9Y676 258 aaKnown RBP2.77□□□□□ -1.97
CD44-229ENST00000528672 MTUS2Q5JR59 1369 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 TRAV26-1A0A087WT03 109 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 FAM240BA0A1B0GVZ2 78 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 FAM74A7A6NL05 159 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 SMIM23A6NLE4 172 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 hCG_2039718K7EN88 272 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 BMPR1BO00238 502 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 FOXE1O00358 373 aaPredicted RBP2.76□□□□□ -1.97
CD44-229ENST00000528672 FBP2O00757 339 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 BCKDKO14874 412 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 SLC31A2O15432 143 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 NUPL2O15504 423 aaKnown RBP2.76□□□□□ -1.97
CD44-229ENST00000528672 LCMT2O60294 686 aaKnown RBP2.76□□□□□ -1.97
CD44-229ENST00000528672 FCMRO60667 390 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 TPST2O60704 377 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 NOL4O94818 638 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 KRT75O95678 551 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 PGK1P00558 417 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 F10P00742 488 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 TNNC2P02585 160 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 IFNA16P05015 189 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 CRHP06850 196 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 GP1BAP07359 652 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 CFC1BP0CG36 223 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 CFC1P0CG37 223 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 DBTP11182 482 aaKnown RBP2.76□□□□□ -1.97
CD44-229ENST00000528672 GFAPP14136 432 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 CPN1P15169 458 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 CD1DP15813 335 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 XRCC1P18887 633 aaPredicted RBP2.76□□□□□ -1.97
CD44-229ENST00000528672 AOC1P19801 751 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 CASP14P31944 242 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 EPHX2P34913 555 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 SAA4P35542 130 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 TIMP3P35625 211 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 OPRL1P41146 370 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 P2RY2P41231 377 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 GRIA1P42261 906 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 MAGEA5P43359 124 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 GSSP48637 474 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 RAB9AP51151 201 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 PLA2G16P53816 162 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 ATP5J2P56134 94 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 ERVS71-1P61550 626 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 AP1S1P61966 158 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 PSPHP78330 225 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 CDK16Q00536 496 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 FLI1Q01543 452 aaPredicted RBP2.76□□□□□ -1.97
CD44-229ENST00000528672 ILKQ13418 452 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 FLOT2Q14254 428 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 FASTKQ14296 549 aaKnown RBP2.76□□□□□ -1.97
CD44-229ENST00000528672 PSG3Q16557 428 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 KNOP1Q1ED39 458 aaKnown RBP2.76□□□□□ -1.97
CD44-229ENST00000528672 HLA-BQ31612 363 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 C18orf21Q32NC0 220 aaPredicted RBP2.76□□□□□ -1.97
CD44-229ENST00000528672 FAM74A3Q4VXF1 159 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 ACER2Q5QJU3 275 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 AGAP7PQ5VUJ5 663 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 KHDRBS2Q5VWX1 349 aaKnown RBP2.76□□□□□ -1.97
CD44-229ENST00000528672 ZSCAN25Q6NSZ9 544 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 PNCKQ6P2M8 343 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 BTNL3Q6UXE8 466 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 CLEC18BQ6UXF7 455 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 Q6ZSR9 355 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 PGAP1Q75T13 922 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 PID1Q7Z2X4 250 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 TSEN54Q7Z6J9 526 aaKnown RBP2.76□□□□□ -1.97
CD44-229ENST00000528672 DPPA2Q7Z7J5 298 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 ACOT1Q86TX2 421 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 PAQR7Q86WK9 346 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 MMAAQ8IVH4 418 aaKnown RBP2.76□□□□□ -1.97
CD44-229ENST00000528672 LRRC75A-AS1Q8N1F1 130 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 CYP4Z2PQ8N1L4 340 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 SPEM1Q8N4L4 309 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 GATSQ8NAP1 163 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 OR52B6Q8NGF0 335 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 OR10G7Q8NGN6 311 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 NANPQ8TBE9 248 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 SPPL2AQ8TCT8 520 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 RASSF5Q8WWW0 418 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 CPNE4Q96A23 557 aaPredicted RBP2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms