RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 KRT75O95678 551 aa20.4■□□□□ 0.86
CPSF1-202ENST00000527827 PNMTP11086 282 aa20.4■□□□□ 0.86
CPSF1-202ENST00000527827 CBR1P16152 277 aa20.4■□□□□ 0.86
CPSF1-202ENST00000527827 BGNP21810 368 aa20.4■□□□□ 0.86
CPSF1-202ENST00000527827 CHN2P52757 468 aa20.4■□□□□ 0.86
CPSF1-202ENST00000527827 ARF1P84077 181 aaKnown RBP20.4■□□□□ 0.86
CPSF1-202ENST00000527827 RNF220Q5VTB9 566 aa20.4■□□□□ 0.86
CPSF1-202ENST00000527827 MFSD8Q8NHS3 518 aa20.4■□□□□ 0.86
CPSF1-202ENST00000527827 STK35Q8TDR2 534 aa20.4■□□□□ 0.86
CPSF1-202ENST00000527827 AENQ8WTP8 325 aaKnown RBP20.4■□□□□ 0.86
CPSF1-202ENST00000527827 HPS1Q92902 700 aa20.4■□□□□ 0.86
CPSF1-202ENST00000527827 PTDSS2Q9BVG9 487 aa20.4■□□□□ 0.86
CPSF1-202ENST00000527827 TMEFF2Q9UIK5 374 aaPredicted RBP20.4■□□□□ 0.86
CPSF1-202ENST00000527827 GPR45Q9Y5Y3 372 aa20.4■□□□□ 0.86
CPSF1-202ENST00000527827 A0A096LPI6 279 aa20.39■□□□□ 0.85
CPSF1-202ENST00000527827 IGHV2OR16-5A0A0B4J2B6 119 aa20.39■□□□□ 0.85
CPSF1-202ENST00000527827 TCF21O43680 179 aa20.39■□□□□ 0.85
CPSF1-202ENST00000527827 BCHEP06276 602 aa20.39■□□□□ 0.85
CPSF1-202ENST00000527827 ETFAP13804 333 aa20.39■□□□□ 0.85
CPSF1-202ENST00000527827 NPR2P20594 1047 aa20.39■□□□□ 0.85
CPSF1-202ENST00000527827 CLDN17P56750 224 aa20.39■□□□□ 0.85
CPSF1-202ENST00000527827 RPS26P11Q5JNZ5 115 aaPredicted RBP20.39■□□□□ 0.85
CPSF1-202ENST00000527827 SPATA21Q7Z572 469 aa20.39■□□□□ 0.85
CPSF1-202ENST00000527827 SERPINA11Q86U17 422 aa20.39■□□□□ 0.85
CPSF1-202ENST00000527827 KIRREL3Q8IZU9 778 aa20.39■□□□□ 0.85
CPSF1-202ENST00000527827 ZNF786Q8N393 782 aa20.39■□□□□ 0.85
CPSF1-202ENST00000527827 ANKK1Q8NFD2 765 aa20.39■□□□□ 0.85
CPSF1-202ENST00000527827 SLC38A5Q8WUX1 472 aa20.39■□□□□ 0.85
CPSF1-202ENST00000527827 SLC25A36Q96CQ1 311 aa20.39■□□□□ 0.85
CPSF1-202ENST00000527827 SNX18Q96RF0 628 aa20.39■□□□□ 0.85
CPSF1-202ENST00000527827 CALML5Q9NZT1 146 aa20.39■□□□□ 0.85
CPSF1-202ENST00000527827 SEC14L4Q9UDX3 406 aa20.39■□□□□ 0.85
CPSF1-202ENST00000527827 RCE1Q9Y256 329 aa20.39■□□□□ 0.85
CPSF1-202ENST00000527827 RFXANKO14593 260 aa20.38■□□□□ 0.85
CPSF1-202ENST00000527827 AHSA1O95433 338 aa20.38■□□□□ 0.85
CPSF1-202ENST00000527827 NCF2P19878 526 aaPredicted RBP20.38■□□□□ 0.85
CPSF1-202ENST00000527827 APEX1P27695 318 aaKnown RBP20.38■□□□□ 0.85
CPSF1-202ENST00000527827 CRISP3P54108 245 aa20.38■□□□□ 0.85
CPSF1-202ENST00000527827 EGR4Q05215 589 aa20.38■□□□□ 0.85
CPSF1-202ENST00000527827 RIN1Q13671 783 aa20.38■□□□□ 0.85
CPSF1-202ENST00000527827 CDK20Q8IZL9 346 aa20.38■□□□□ 0.85
CPSF1-202ENST00000527827 LINC01356Q8N9X3 169 aa20.38■□□□□ 0.85
CPSF1-202ENST00000527827 ZNF837Q96EG3 531 aaPredicted RBP20.38■□□□□ 0.85
CPSF1-202ENST00000527827 SPATA9Q9BWV2 254 aa20.38■□□□□ 0.85
CPSF1-202ENST00000527827 GPR35Q9HC97 309 aa20.38■□□□□ 0.85
CPSF1-202ENST00000527827 B3GAT1Q9P2W7 334 aa20.38■□□□□ 0.85
CPSF1-202ENST00000527827 TM9SF1O15321 606 aa20.37■□□□□ 0.85
CPSF1-202ENST00000527827 FZD7O75084 574 aa20.37■□□□□ 0.85
CPSF1-202ENST00000527827 ITGA2P17301 1181 aa20.37■□□□□ 0.85
CPSF1-202ENST00000527827 RPS5P46782 204 aaKnown RBP20.37■□□□□ 0.85
CPSF1-202ENST00000527827 CDH15P55291 814 aa20.37■□□□□ 0.85
CPSF1-202ENST00000527827 STX3Q13277 289 aa20.37■□□□□ 0.85
CPSF1-202ENST00000527827 MPP2Q14168 576 aa20.37■□□□□ 0.85
CPSF1-202ENST00000527827 LARS2Q15031 903 aaKnown RBP20.37■□□□□ 0.85
CPSF1-202ENST00000527827 TRIP10Q15642 601 aa20.37■□□□□ 0.85
CPSF1-202ENST00000527827 ADRM1Q16186 407 aa20.37■□□□□ 0.85
CPSF1-202ENST00000527827 ATG16L1Q676U5 607 aa20.37■□□□□ 0.85
CPSF1-202ENST00000527827 ANKRD27Q96NW4 1050 aa20.37■□□□□ 0.85
CPSF1-202ENST00000527827 SSU72Q9NP77 194 aaKnown RBP20.37■□□□□ 0.85
CPSF1-202ENST00000527827 SH3PXD2BA1X283 911 aa20.36■□□□□ 0.85
CPSF1-202ENST00000527827 VSTM5A8MXK1 200 aa20.36■□□□□ 0.85
CPSF1-202ENST00000527827 ERCC1P07992 297 aaPredicted RBP20.36■□□□□ 0.85
CPSF1-202ENST00000527827 ZNF43P17038 809 aa20.36■□□□□ 0.85
CPSF1-202ENST00000527827 ARR3P36575 388 aa20.36■□□□□ 0.85
CPSF1-202ENST00000527827 CRATP43155 626 aa20.36■□□□□ 0.85
CPSF1-202ENST00000527827 DSTNP60981 165 aa20.36■□□□□ 0.85
CPSF1-202ENST00000527827 BST1Q10588 318 aa20.36■□□□□ 0.85
CPSF1-202ENST00000527827 NPRL3Q12980 569 aa20.36■□□□□ 0.85
CPSF1-202ENST00000527827 CEACAM16Q2WEN9 425 aa20.36■□□□□ 0.85
CPSF1-202ENST00000527827 KRT71Q3SY84 523 aa20.36■□□□□ 0.85
CPSF1-202ENST00000527827 GLB1L3Q8NCI6 653 aaPredicted RBP20.36■□□□□ 0.85
CPSF1-202ENST00000527827 UBASH3BQ8TF42 649 aa20.36■□□□□ 0.85
CPSF1-202ENST00000527827 CKAP2Q8WWK9 683 aa20.36■□□□□ 0.85
CPSF1-202ENST00000527827 KTI12Q96EK9 354 aaPredicted RBP20.36■□□□□ 0.85
CPSF1-202ENST00000527827 TMEM19Q96HH6 336 aa20.36■□□□□ 0.85
CPSF1-202ENST00000527827 OXGR1Q96P68 337 aa20.36■□□□□ 0.85
CPSF1-202ENST00000527827 ZBTB18Q99592 522 aa20.36■□□□□ 0.85
CPSF1-202ENST00000527827 WDR55Q9H6Y2 383 aaPredicted RBP20.36■□□□□ 0.85
CPSF1-202ENST00000527827 ZNF232Q9UNY5 417 aa20.36■□□□□ 0.85
CPSF1-202ENST00000527827 LYNX1G3V0Z9 82 aa20.35■□□□□ 0.85
CPSF1-202ENST00000527827 SLC43A1O75387 559 aa20.35■□□□□ 0.85
CPSF1-202ENST00000527827 LYNX1P0DP58 116 aa20.35■□□□□ 0.85
CPSF1-202ENST00000527827 SRP14P37108 136 aaKnown RBP20.35■□□□□ 0.85
CPSF1-202ENST00000527827 HOXC5Q00444 222 aa20.35■□□□□ 0.85
CPSF1-202ENST00000527827 GTDC1Q4AE62 458 aa20.35■□□□□ 0.85
CPSF1-202ENST00000527827 MDP1Q86V88 176 aa20.35■□□□□ 0.85
CPSF1-202ENST00000527827 MEX3DQ86XN8 651 aaKnown RBP20.35■□□□□ 0.85
CPSF1-202ENST00000527827 TPT1P8Q9HAU6 139 aa20.35■□□□□ 0.85
CPSF1-202ENST00000527827 DYNLRB1Q9NP97 96 aa20.35■□□□□ 0.85
CPSF1-202ENST00000527827 PCDHB14Q9Y5E9 798 aa20.35■□□□□ 0.85
CPSF1-202ENST00000527827 A0A0G2JPF8 293 aa20.34■□□□□ 0.85
CPSF1-202ENST00000527827 HNRNPCL2B2RXH8 293 aa20.34■□□□□ 0.85
CPSF1-202ENST00000527827 HNRNPCL3B7ZW38 293 aa20.34■□□□□ 0.85
CPSF1-202ENST00000527827 RGS16O15492 202 aaPredicted RBP20.34■□□□□ 0.85
CPSF1-202ENST00000527827 HNRNPCL1O60812 293 aaKnown RBP20.34■□□□□ 0.85
CPSF1-202ENST00000527827 ADRA2AP08913 450 aa20.34■□□□□ 0.85
CPSF1-202ENST00000527827 ZCCHC18P0CG32 403 aa20.34■□□□□ 0.85
CPSF1-202ENST00000527827 HNRNPCL4P0DMR1 293 aa20.34■□□□□ 0.85
CPSF1-202ENST00000527827 IFNGR1P15260 489 aa20.34■□□□□ 0.85
CPSF1-202ENST00000527827 EPHA3P29320 983 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms