RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-223	ENST00000515459	EGR1	P18146	543 aa		13.59	□□□□□ -0.23
LMNA-223	ENST00000515459	ACAA2	P42765	397 aa	Known RBP	13.59	□□□□□ -0.23
LMNA-223	ENST00000515459	CLNS1A	P54105	237 aa	Known RBP	13.59	□□□□□ -0.23
LMNA-223	ENST00000515459	CLDN17	P56750	224 aa		13.59	□□□□□ -0.23
LMNA-223	ENST00000515459	NPRL3	Q12980	569 aa		13.59	□□□□□ -0.23
LMNA-223	ENST00000515459	KRT80	Q6KB66	452 aa		13.59	□□□□□ -0.23
LMNA-223	ENST00000515459	SHQ1	Q6PI26	577 aa	Known RBP	13.59	□□□□□ -0.23
LMNA-223	ENST00000515459	RIBC1	Q8N443	379 aa	Predicted RBP	13.59	□□□□□ -0.23
LMNA-223	ENST00000515459	GCDH	Q92947	438 aa	Predicted RBP	13.59	□□□□□ -0.23
LMNA-223	ENST00000515459	CCDC115	Q96NT0	180 aa		13.59	□□□□□ -0.23
LMNA-223	ENST00000515459	NOX3	Q9HBY0	568 aa		13.59	□□□□□ -0.23
LMNA-223	ENST00000515459	CRLF2	Q9HC73	371 aa		13.59	□□□□□ -0.23
LMNA-223	ENST00000515459	HIF1AN	Q9NWT6	349 aa		13.59	□□□□□ -0.23
LMNA-223	ENST00000515459	BTNL2	Q9UIR0	455 aa		13.59	□□□□□ -0.23
LMNA-223	ENST00000515459	RCE1	Q9Y256	329 aa		13.59	□□□□□ -0.23
LMNA-223	ENST00000515459	GRIP1	Q9Y3R0	1128 aa		13.59	□□□□□ -0.23
LMNA-223	ENST00000515459	SPEF1	Q9Y4P9	236 aa		13.59	□□□□□ -0.23
LMNA-223	ENST00000515459	CCDC154	A6NI56	674 aa		13.58	□□□□□ -0.24
LMNA-223	ENST00000515459		E9PBE3	544 aa		13.58	□□□□□ -0.24
LMNA-223	ENST00000515459		M0R233	179 aa		13.58	□□□□□ -0.24
LMNA-223	ENST00000515459	SYNGR3	O43761	229 aa		13.58	□□□□□ -0.24
LMNA-223	ENST00000515459	NPIPB7	O75200	414 aa		13.58	□□□□□ -0.24
LMNA-223	ENST00000515459	SLC43A1	O75387	559 aa		13.58	□□□□□ -0.24
LMNA-223	ENST00000515459	AHSA1	O95433	338 aa		13.58	□□□□□ -0.24
LMNA-223	ENST00000515459	BPGM	P07738	259 aa		13.58	□□□□□ -0.24
LMNA-223	ENST00000515459	ZNF43	P17038	809 aa		13.58	□□□□□ -0.24
LMNA-223	ENST00000515459	S100A3	P33764	101 aa		13.58	□□□□□ -0.24
LMNA-223	ENST00000515459	GPR6	P46095	362 aa	Predicted RBP	13.58	□□□□□ -0.24
LMNA-223	ENST00000515459	CAPZA2	P47755	286 aa		13.58	□□□□□ -0.24
LMNA-223	ENST00000515459	EVX1	P49640	407 aa		13.58	□□□□□ -0.24
LMNA-223	ENST00000515459	ZNF836	Q6ZNA1	936 aa		13.58	□□□□□ -0.24
LMNA-223	ENST00000515459	MDP1	Q86V88	176 aa		13.58	□□□□□ -0.24
LMNA-223	ENST00000515459	CCDC36	Q8IYA8	594 aa		13.58	□□□□□ -0.24
LMNA-223	ENST00000515459	KDM8	Q8N371	416 aa		13.58	□□□□□ -0.24
LMNA-223	ENST00000515459	GPR137C	Q8N3F9	429 aa		13.58	□□□□□ -0.24
LMNA-223	ENST00000515459	CLDND2	Q8NHS1	167 aa		13.58	□□□□□ -0.24
LMNA-223	ENST00000515459	MFSD8	Q8NHS3	518 aa		13.58	□□□□□ -0.24
LMNA-223	ENST00000515459	PANX1	Q96RD7	426 aa		13.58	□□□□□ -0.24
LMNA-223	ENST00000515459	MS4A5	Q9H3V2	200 aa		13.58	□□□□□ -0.24
LMNA-223	ENST00000515459	USP22	Q9UPT9	525 aa		13.58	□□□□□ -0.24
LMNA-223	ENST00000515459	TMEM89	A2RUT3	159 aa		13.57	□□□□□ -0.24
LMNA-223	ENST00000515459	ZNF503-AS2	A6NEH8	195 aa		13.57	□□□□□ -0.24
LMNA-223	ENST00000515459	TRIM77	I1YAP6	450 aa		13.57	□□□□□ -0.24
LMNA-223	ENST00000515459	RGS9	O75916	674 aa	Predicted RBP	13.57	□□□□□ -0.24
LMNA-223	ENST00000515459	ZNF432	O94892	652 aa		13.57	□□□□□ -0.24
LMNA-223	ENST00000515459	MSMB	P08118	114 aa		13.57	□□□□□ -0.24
LMNA-223	ENST00000515459	PNMT	P11086	282 aa		13.57	□□□□□ -0.24
LMNA-223	ENST00000515459	NCF2	P19878	526 aa	Predicted RBP	13.57	□□□□□ -0.24
LMNA-223	ENST00000515459	NR4A1	P22736	598 aa		13.57	□□□□□ -0.24
LMNA-223	ENST00000515459	CEACAM16	Q2WEN9	425 aa		13.57	□□□□□ -0.24
LMNA-223	ENST00000515459	SLC9B1	Q4ZJI4	515 aa		13.57	□□□□□ -0.24
LMNA-223	ENST00000515459	LIN52	Q52LA3	116 aa		13.57	□□□□□ -0.24
LMNA-223	ENST00000515459	ELFN2	Q5R3F8	820 aa		13.57	□□□□□ -0.24
LMNA-223	ENST00000515459	ZNF621	Q6ZSS3	439 aa		13.57	□□□□□ -0.24
LMNA-223	ENST00000515459	VRK2	Q86Y07	508 aa		13.57	□□□□□ -0.24
LMNA-223	ENST00000515459	ZNF781	Q8N8C0	355 aa		13.57	□□□□□ -0.24
LMNA-223	ENST00000515459	OR52P1P	Q8NH57	321 aa		13.57	□□□□□ -0.24
LMNA-223	ENST00000515459	KIF18A	Q8NI77	898 aa		13.57	□□□□□ -0.24
LMNA-223	ENST00000515459	STK35	Q8TDR2	534 aa		13.57	□□□□□ -0.24
LMNA-223	ENST00000515459	FAM216A	Q8WUB2	273 aa		13.57	□□□□□ -0.24
LMNA-223	ENST00000515459	MRPL24	Q96A35	216 aa	Known RBP	13.57	□□□□□ -0.24
LMNA-223	ENST00000515459	SLC25A36	Q96CQ1	311 aa		13.57	□□□□□ -0.24
LMNA-223	ENST00000515459	MRPL37	Q9BZE1	423 aa	Known RBP	13.57	□□□□□ -0.24
LMNA-223	ENST00000515459	NARFL	Q9H6Q4	476 aa		13.57	□□□□□ -0.24
LMNA-223	ENST00000515459	LPAR2	Q9HBW0	351 aa		13.57	□□□□□ -0.24
LMNA-223	ENST00000515459	GPR35	Q9HC97	309 aa		13.57	□□□□□ -0.24
LMNA-223	ENST00000515459	REV1	Q9UBZ9	1251 aa		13.57	□□□□□ -0.24
LMNA-223	ENST00000515459	PCDHB10	Q9UN67	800 aa		13.57	□□□□□ -0.24
LMNA-223	ENST00000515459	FAM157A	C9JC47	383 aa		13.56	□□□□□ -0.24
LMNA-223	ENST00000515459	FTCDNL1	E5RQL4	147 aa		13.56	□□□□□ -0.24
LMNA-223	ENST00000515459	ITM2A	O43736	263 aa		13.56	□□□□□ -0.24
LMNA-223	ENST00000515459	TF	P02787	698 aa		13.56	□□□□□ -0.24
LMNA-223	ENST00000515459	MYZAP	P0CAP1	466 aa		13.56	□□□□□ -0.24
LMNA-223	ENST00000515459	SAG	P10523	405 aa	Predicted RBP	13.56	□□□□□ -0.24
LMNA-223	ENST00000515459	ACHE	P22303	614 aa		13.56	□□□□□ -0.24
LMNA-223	ENST00000515459	GTF2E2	P29084	291 aa	Known RBP	13.56	□□□□□ -0.24
LMNA-223	ENST00000515459	HILS1	P60008	231 aa		13.56	□□□□□ -0.24
LMNA-223	ENST00000515459	COX20	Q5RI15	118 aa		13.56	□□□□□ -0.24
LMNA-223	ENST00000515459	THSD4	Q6ZMP0	1018 aa		13.56	□□□□□ -0.24
LMNA-223	ENST00000515459	USP43	Q70EL4	1123 aa		13.56	□□□□□ -0.24
LMNA-223	ENST00000515459	CARM1	Q86X55	608 aa		13.56	□□□□□ -0.24
LMNA-223	ENST00000515459	NUDCD3	Q8IVD9	361 aa		13.56	□□□□□ -0.24
LMNA-223	ENST00000515459	OR51F2	Q8NH61	342 aa		13.56	□□□□□ -0.24
LMNA-223	ENST00000515459	PNPT1	Q8TCS8	783 aa	Known RBP	13.56	□□□□□ -0.24
LMNA-223	ENST00000515459	RDH5	Q92781	318 aa		13.56	□□□□□ -0.24
LMNA-223	ENST00000515459	ZNF837	Q96EG3	531 aa	Predicted RBP	13.56	□□□□□ -0.24
LMNA-223	ENST00000515459	OXGR1	Q96P68	337 aa		13.56	□□□□□ -0.24
LMNA-223	ENST00000515459	LRRC37B	Q96QE4	947 aa		13.56	□□□□□ -0.24
LMNA-223	ENST00000515459	RACGAP1	Q9H0H5	632 aa		13.56	□□□□□ -0.24
LMNA-223	ENST00000515459	ZNF99	A8MXY4	864 aa	Predicted RBP	13.55	□□□□□ -0.24
LMNA-223	ENST00000515459	KCNAB3	O43448	404 aa		13.55	□□□□□ -0.24
LMNA-223	ENST00000515459	SEC14L2	O76054	403 aa		13.55	□□□□□ -0.24
LMNA-223	ENST00000515459	HPX	P02790	462 aa		13.55	□□□□□ -0.24
LMNA-223	ENST00000515459	GAA	P10253	952 aa		13.55	□□□□□ -0.24
LMNA-223	ENST00000515459	PRG2	P13727	222 aa		13.55	□□□□□ -0.24
LMNA-223	ENST00000515459	LBP	P18428	481 aa		13.55	□□□□□ -0.24
LMNA-223	ENST00000515459	COL8A2	P25067	703 aa		13.55	□□□□□ -0.24
LMNA-223	ENST00000515459	CDKN2C	P42773	168 aa		13.55	□□□□□ -0.24
LMNA-223	ENST00000515459	RPS5	P46782	204 aa	Known RBP	13.55	□□□□□ -0.24
LMNA-223	ENST00000515459	LRRC74A	Q0VAA2	488 aa		13.55	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms