RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 AMDHD1Q96NU7 426 aa10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 ABHD6Q9BV23 337 aa10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 GPR174Q9BXC1 333 aa10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 WWTR1Q9GZV5 400 aa10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 NAA50Q9GZZ1 169 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 NKX2-4Q9H2Z4 354 aa10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 GOLT1BQ9Y3E0 138 aa10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 KDM6BO15054 1643 aa10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 SYT5O00445 386 aa10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 B4GAT1O43505 415 aa10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 SUSD5O60279 629 aa10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 ADAM11O75078 769 aa10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 GCH1P30793 250 aa10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 ZNF280AP59817 542 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 KREMEN2Q8NCW0 462 aa10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 F2RL3Q96RI0 385 aa10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 CNIH4Q9P003 139 aa10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 C7orf72A4D263 438 aa10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 MTX2O75431 263 aa10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 ABHD16AO95870 558 aa10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 C8AP07357 584 aa10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 GABRR1P24046 479 aa10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 CSN1S1P47710 185 aa10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 DUSP3P51452 185 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 MAP2K6P52564 334 aa10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 GP2P55259 537 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 TGFBR3Q03167 851 aa10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 ZNF805Q5CZA5 627 aa10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 IGSF11Q5DX21 431 aa10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 OR52B6Q8NGF0 335 aa10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 CERKQ8TCT0 537 aa10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 SLC2A9Q9NRM0 540 aa10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 IGSF5Q9NSI5 407 aa10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 SSUH2Q9Y2M2 353 aa10.47□□□□□ -0.73
LIMCH1-217ENST00000512946 HSPB2A8KAH6 182 aa10.46□□□□□ -0.73
LIMCH1-217ENST00000512946 DCTN6O00399 190 aa10.46□□□□□ -0.73
LIMCH1-217ENST00000512946 DUSP11O75319 330 aaKnown RBP10.46□□□□□ -0.73
LIMCH1-217ENST00000512946 ADH5P11766 374 aa10.46□□□□□ -0.73
LIMCH1-217ENST00000512946 SNRPBP14678 240 aaKnown RBP10.46□□□□□ -0.73
LIMCH1-217ENST00000512946 SIM1P81133 766 aaPredicted RBP10.46□□□□□ -0.73
LIMCH1-217ENST00000512946 HSPB2Q16082 182 aa10.46□□□□□ -0.73
LIMCH1-217ENST00000512946 CPEB4Q17RY0 729 aaKnown RBP eCLIP10.46□□□□□ -0.73
LIMCH1-217ENST00000512946 CELF5Q8N6W0 485 aaKnown RBP10.46□□□□□ -0.73
LIMCH1-217ENST00000512946 CSNK1A1LQ8N752 337 aa10.46□□□□□ -0.73
LIMCH1-217ENST00000512946 SORT1Q99523 831 aa10.46□□□□□ -0.73
LIMCH1-217ENST00000512946 FAM173AQ9BQD7 235 aa10.46□□□□□ -0.73
LIMCH1-217ENST00000512946 SOX7Q9BT81 388 aa10.46□□□□□ -0.73
LIMCH1-217ENST00000512946 CLMPQ9H6B4 373 aa10.46□□□□□ -0.73
LIMCH1-217ENST00000512946 RALYQ9UKM9 306 aaKnown RBP10.46□□□□□ -0.73
LIMCH1-217ENST00000512946 ENTPD2Q9Y5L3 495 aa10.46□□□□□ -0.73
LIMCH1-217ENST00000512946 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.46□□□□□ -0.73
LIMCH1-217ENST00000512946 PTPRMP28827 1452 aa10.46□□□□□ -0.73
LIMCH1-217ENST00000512946 SCGB1C2P0DMR2 95 aa10.46□□□□□ -0.73
LIMCH1-217ENST00000512946 FBLP22087 321 aaKnown RBP10.46□□□□□ -0.73
LIMCH1-217ENST00000512946 RAG2P55895 527 aa10.46□□□□□ -0.73
LIMCH1-217ENST00000512946 PRRT3Q5FWE3 981 aa10.46□□□□□ -0.73
LIMCH1-217ENST00000512946 CARD17Q5XLA6 110 aa10.46□□□□□ -0.73
LIMCH1-217ENST00000512946 PODNL1Q6PEZ8 512 aa10.46□□□□□ -0.73
LIMCH1-217ENST00000512946 Q8N9G6 341 aaPredicted RBP10.46□□□□□ -0.73
LIMCH1-217ENST00000512946 CYB561A3Q8NBI2 242 aa10.46□□□□□ -0.73
LIMCH1-217ENST00000512946 SGPP1Q9BX95 441 aa10.46□□□□□ -0.73
LIMCH1-217ENST00000512946 HRASLS2Q9NWW9 162 aa10.46□□□□□ -0.73
LIMCH1-217ENST00000512946 DNAJB11Q9UBS4 358 aa10.46□□□□□ -0.73
LIMCH1-217ENST00000512946 SLC23A2Q9UGH3 650 aa10.46□□□□□ -0.73
LIMCH1-217ENST00000512946 GPR31O00270 319 aa10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 CCL16O15467 120 aa10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 XRCC3O43542 346 aa10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 LIPCP11150 499 aa10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 SLC2A1P11166 492 aa10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 GLB1P16278 677 aa10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 HOXA1P49639 335 aaPredicted RBP10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 OR10A3P58181 314 aa10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 OR4D1Q15615 310 aa10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 PRAMEF8Q5VWM4 474 aa10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 PRAMEF7Q5VXH5 474 aa10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 WBP2NLQ6ICG8 309 aa10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 TAS1R3Q7RTX0 852 aa10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 LSRQ86X29 649 aaPredicted RBP10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 PHYHIPLQ96FC7 376 aa10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 SLC6A18Q96N87 628 aa10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 CIB3Q96Q77 187 aaPredicted RBP10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 IKZF4Q9H2S9 585 aa10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 PLK3Q9H4B4 646 aa10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 ELOVL3Q9HB03 270 aa10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 B4DGG1 531 aa10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 BCL2L11O43521 198 aa10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 LILRB3O75022 631 aa10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 OMGP23515 440 aa10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 WASP42768 502 aa10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 DCAF7P61962 342 aa10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 ELOCQ15369 112 aa10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 LRRC73Q5JTD7 316 aa10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 RAET1LQ5VY80 246 aa10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 DHRS4L2Q6PKH6 230 aa10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 LCTLQ6UWM7 567 aa10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 B3GNT9Q6UX72 402 aa10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 Q6ZTK2 550 aa10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 KLHDC8AQ8IYD2 350 aa10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 SMOQ99835 787 aa10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 SMIM7Q9BQ49 75 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms