RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 OR7E24Q6IFN5 339 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 SLC43A2Q8N370 569 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 OR51D1Q8NGF3 324 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 THAP3Q8WTV1 239 aaPredicted RBP7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 SLC25A44Q96H78 314 aaPredicted RBP7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 MAP6Q96JE9 813 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 Q96M85 177 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 KIR3DX1Q9H7L2 352 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 CHMP1AQ9HD42 196 aaPredicted RBP7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 HRASLSQ9HDD0 168 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 PCDHB16Q9NRJ7 776 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 WSB2Q9NYS7 404 aaPredicted RBP7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 SCML1Q9UN30 329 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 ADAM18Q9Y3Q7 739 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 ETV7Q9Y603 341 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 TMEM82A0PJX8 343 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 DNAJB6O75190 326 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 GLCEO94923 617 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 CSTBP04080 98 aaKnown RBP7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 TPOP07202 933 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 SLC35E2P0CK97 266 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 PRKACAP17612 351 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 AMY2BP19961 511 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 CD79BP40259 229 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 RAD52P43351 418 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 SLC6A8P48029 635 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 NR0B1P51843 470 aaKnown RBP7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 CLRN1P58418 232 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 LSM11P83369 360 aaKnown RBP eCLIP7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 SPOCK1Q08629 439 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 CDK5R1Q15078 307 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 ELOCQ15369 112 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 BCL2A1Q16548 175 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 ZXDCQ2QGD7 858 aaPredicted RBP7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 SLC35D2Q76EJ3 337 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 BPIFB2Q8N4F0 458 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 SPPL3Q8TCT6 385 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 ELP5Q8TE02 316 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 SMIM19Q96E16 107 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 ZDHHC12Q96GR4 267 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 NRTNQ99748 197 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 CDCP1Q9H5V8 836 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 SLC6A20Q9NP91 592 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 PRDM7Q9NQW5 492 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 TBC1D29Q9UFV1 150 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 SERTAD3Q9UJW9 196 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 RBM7Q9Y580 266 aaKnown RBP7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 F8W036 122 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 FGF17O60258 216 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 SEMA4FO95754 770 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 THEGLP0DJG4 465 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 EPXP11678 715 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 SLC2A5P22732 501 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 S100GP29377 79 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 RABIFP47224 123 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 ZNF41P51814 821 aaPredicted RBP7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 BLOC1S1P78537 153 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 MAT1AQ00266 395 aaKnown RBP7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 IFITM2Q01629 132 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 MC2RQ01718 297 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 GLO1Q04760 184 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 NSDHLQ15738 373 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 SLC35D3Q5M8T2 416 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 AADACL4Q5VUY2 407 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 TMEM184AQ6ZMB5 413 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 ZNF704Q6ZNC4 412 aaPredicted RBP7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 IDO2Q6ZQW0 420 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 ANKRD33Q7Z3H0 272 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 OR6N1Q8NGY5 312 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 DVL3Q92997 716 aaPredicted RBP7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 DHRS9Q9BPW9 319 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 URM1Q9BTM9 101 aaKnown RBP7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 B3GAT2Q9NPZ5 323 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 HHLA2Q9UM44 414 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 MIA3Q5JRA6 1907 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 HLA-AP01891 365 aaKnown RBP7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 CD14P08571 375 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 GIPP09681 153 aaPredicted RBP7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 CRABP1P29762 137 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 PLEKHN1Q494U1 663 aaPredicted RBP7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 CHRFAM7AQ494W8 412 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 AWAT2Q6E213 333 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 PXKQ7Z7A4 578 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 SYS1Q8N2H4 156 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 ANGPTL6Q8NI99 470 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 ORAI1Q96D31 301 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 METTL7AQ9H8H3 244 aa7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 EXOGQ9Y2C4 368 aaKnown RBP7.75□□□□□ -1.17
LIMCH1-216ENST00000512820 ANKRD61A6NGH8 418 aa7.74□□□□□ -1.17
LIMCH1-216ENST00000512820 SYT7O43581 403 aa7.74□□□□□ -1.17
LIMCH1-216ENST00000512820 MSL3P1P0C860 447 aa7.74□□□□□ -1.17
LIMCH1-216ENST00000512820 UBBP0CG47 229 aa7.74□□□□□ -1.17
LIMCH1-216ENST00000512820 UBCP0CG48 685 aaKnown RBP7.74□□□□□ -1.17
LIMCH1-216ENST00000512820 DIO1P49895 249 aa7.74□□□□□ -1.17
LIMCH1-216ENST00000512820 RPS27AP62979 156 aaKnown RBP7.74□□□□□ -1.17
LIMCH1-216ENST00000512820 UBA52P62987 128 aaKnown RBP7.74□□□□□ -1.17
LIMCH1-216ENST00000512820 IL13RA1P78552 427 aa7.74□□□□□ -1.17
LIMCH1-216ENST00000512820 TMEM225Q6GV28 225 aa7.74□□□□□ -1.17
LIMCH1-216ENST00000512820 SIGIRRQ6IA17 410 aa7.74□□□□□ -1.17
LIMCH1-216ENST00000512820 FAAP20Q6NZ36 180 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms