RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 TRAM1L1Q8N609 369 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 OR52M1Q8NGK5 317 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 RNASE11Q8TAA1 199 aaKnown RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 YIPF5Q969M3 257 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 TAMM41Q96BW9 452 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 TMEM80Q96HE8 168 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 TPD52L3Q96J77 140 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 ZNF641Q96N77 438 aaPredicted RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 SERPINB12Q96P63 405 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 PANX3Q96QZ0 392 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 PANX2Q96RD6 677 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 ERGIC2Q96RQ1 377 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 C12orf57Q99622 126 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 ACBD6Q9BR61 282 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 ZNF251Q9BRH9 671 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 SEC22CQ9BRL7 303 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 TMEM175Q9BSA9 504 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 ZSCAN5AQ9BUG6 496 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 CHID1Q9BWS9 393 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 PLA2G12AQ9BZM1 189 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 BCL2L14Q9BZR8 327 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 ZYG11BQ9C0D3 744 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 ELOVL4Q9GZR5 314 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 ALX4Q9H161 411 aaPredicted RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 METTL9Q9H1A3 318 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 PIGUQ9H490 435 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 DCLRE1BQ9H816 532 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 RGS18Q9NS28 235 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 NRBP2Q9NSY0 501 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 DNAJC17Q9NVM6 304 aaKnown RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 KLHL28Q9NXS3 571 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 NKIRAS1Q9NYS0 192 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 SPASTQ9UBP0 616 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 GNPTGQ9UJJ9 305 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 STOML2Q9UJZ1 356 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 RAB23Q9ULC3 237 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 TDRKHQ9Y2W6 561 aaKnown RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 MRPS2Q9Y399 296 aaKnown RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 PUS1Q9Y606 427 aaKnown RBP eCLIP1.48□□□□□ -2.17
NUP54-208ENST00000508604 TAF1LQ8IZX4 1826 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 MAPKBP1O60336 1514 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 KIAA0232Q92628 1395 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 TONSLQ96HA7 1378 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 KIF14Q15058 1648 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 MAGI1Q96QZ7 1491 aaPredicted RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 CLUHO75153 1309 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 DNMBPQ6XZF7 1577 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 NCOA1Q15788 1441 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 SPATA31E1Q6ZUB1 1445 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 YTHDC2Q9H6S0 1430 aaKnown RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 PDS5BQ9NTI5 1447 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 RIMS1Q86UR5 1692 aaKnown RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 CHD4Q14839 1912 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 A0A0J9YYE9 177 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 A0A1W2PRG6 482 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 VPS37CA5D8V6 355 aaPredicted RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 FAM149AA5PLN7 773 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 GMNCA6NCL1 334 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 SDR42E2A6NKP2 422 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 ZNF729A6NN14 1252 aaPredicted RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 KPNA4O00629 521 aaPredicted RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 ITGB1BP1O14713 200 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 TM9SF1O15321 606 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 TOX3O15405 576 aaPredicted RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 TSPAN2O60636 221 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 EIF1BO60739 113 aaKnown RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 TOM1O60784 492 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 ICOSLGO75144 302 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 NDUFS6O75380 124 aaKnown RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 CSDE1O75534 798 aaKnown RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 CIB2O75838 187 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 DCTN3O75935 186 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 AKAP3O75969 853 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 LDOC1O95751 146 aaPredicted RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 TGM6O95932 706 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 GH1P01241 217 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 TRBC1P01850 177 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 MBP02144 154 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 TNNC2P02585 160 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 S100A8P05109 93 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 HPNP05981 417 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 SERPINA6P08185 405 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 PAEPP09466 180 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 SMIM6P0DI80 62 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 COX5BP10606 129 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 MCF2P10911 925 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 DBTP11182 482 aaKnown RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 PVRP15151 417 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 PRPS1L1P21108 318 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 WARSP23381 471 aaKnown RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 AHCYP23526 432 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 CD1BP29016 333 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 GJB2P29033 226 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 IL2RGP31785 369 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 OR1D2P34982 312 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 CYLC1P35663 651 aaPredicted RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 TAGLN2P37802 199 aaKnown RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 MDH1P40925 334 aaKnown RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 EIF1P41567 113 aaKnown RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 CRATP43155 626 aa1.48□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms