RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 ZNF275Q9NSD4 429 aaPredicted RBP14.16□□□□□ -0.14
VIM-208ENST00000497849 DDX28Q9NUL7 540 aaKnown RBP14.16□□□□□ -0.14
VIM-208ENST00000497849 WNK1Q9H4A3 2382 aa14.15□□□□□ -0.14
VIM-208ENST00000497849 TMEM72A0PK05 275 aa14.15□□□□□ -0.14
VIM-208ENST00000497849 ZC3H12DA2A288 527 aaKnown RBP14.15□□□□□ -0.14
VIM-208ENST00000497849 ZNF587BE7ETH6 402 aa14.15□□□□□ -0.14
VIM-208ENST00000497849 RRP9O43818 475 aaKnown RBP14.15□□□□□ -0.14
VIM-208ENST00000497849 MYBPC1Q00872 1141 aa14.15□□□□□ -0.14
VIM-208ENST00000497849 SPDYE7PQ495Y7 208 aa14.15□□□□□ -0.14
VIM-208ENST00000497849 XKR7Q5GH72 579 aa14.15□□□□□ -0.14
VIM-208ENST00000497849 OTUD3Q5T2D3 398 aaPredicted RBP14.15□□□□□ -0.14
VIM-208ENST00000497849 R3HCC1LQ7Z5L2 792 aaKnown RBP14.15□□□□□ -0.14
VIM-208ENST00000497849 BPIFB2Q8N4F0 458 aa14.15□□□□□ -0.14
VIM-208ENST00000497849 TMEM99Q8N816 258 aa14.15□□□□□ -0.14
VIM-208ENST00000497849 OR5AK3PQ8NH89 298 aa14.15□□□□□ -0.14
VIM-208ENST00000497849 RNF217Q8TC41 542 aa14.15□□□□□ -0.14
VIM-208ENST00000497849 C22orf15Q8WYQ4 148 aa14.15□□□□□ -0.14
VIM-208ENST00000497849 OR5P2Q8WZ92 322 aa14.15□□□□□ -0.14
VIM-208ENST00000497849 RDH5Q92781 318 aa14.15□□□□□ -0.14
VIM-208ENST00000497849 C7orf26Q96N11 449 aa14.15□□□□□ -0.14
VIM-208ENST00000497849 ZNF317Q96PQ6 595 aaPredicted RBP14.15□□□□□ -0.14
VIM-208ENST00000497849 SF3B5Q9BWJ5 86 aaKnown RBP14.15□□□□□ -0.14
VIM-208ENST00000497849 C1QTNF5Q9BXJ0 243 aa14.15□□□□□ -0.14
VIM-208ENST00000497849 MRPL37Q9BZE1 423 aaKnown RBP14.15□□□□□ -0.14
VIM-208ENST00000497849 ZNF350Q9GZX5 532 aa14.15□□□□□ -0.14
VIM-208ENST00000497849 WDR55Q9H6Y2 383 aaPredicted RBP14.15□□□□□ -0.14
VIM-208ENST00000497849 SLC52A3Q9NQ40 469 aa14.15□□□□□ -0.14
VIM-208ENST00000497849 REV1Q9UBZ9 1251 aa14.15□□□□□ -0.14
VIM-208ENST00000497849 PCDHGB4Q9UN71 923 aa14.15□□□□□ -0.14
VIM-208ENST00000497849 ARHGAP32A7KAX9 2087 aa14.14□□□□□ -0.15
VIM-208ENST00000497849 TMED7-TICAM2A0A0A6YYA0 188 aa14.14□□□□□ -0.15
VIM-208ENST00000497849 ZNF503-AS2A6NEH8 195 aa14.14□□□□□ -0.15
VIM-208ENST00000497849 SDHDO14521 159 aa14.14□□□□□ -0.15
VIM-208ENST00000497849 LSM1O15116 133 aaKnown RBP14.14□□□□□ -0.15
VIM-208ENST00000497849 SCAMP2O15127 329 aaKnown RBP14.14□□□□□ -0.15
VIM-208ENST00000497849 ZNF208O43345 1280 aa14.14□□□□□ -0.15
VIM-208ENST00000497849 SYNGR3O43761 229 aa14.14□□□□□ -0.15
VIM-208ENST00000497849 STX11O75558 287 aa14.14□□□□□ -0.15
VIM-208ENST00000497849 UPK3AO75631 287 aa14.14□□□□□ -0.15
VIM-208ENST00000497849 KRT33AO76009 404 aa14.14□□□□□ -0.15
VIM-208ENST00000497849 C6orf47O95873 294 aa14.14□□□□□ -0.15
VIM-208ENST00000497849 BCKDHAP12694 445 aa14.14□□□□□ -0.15
VIM-208ENST00000497849 CBR1P16152 277 aa14.14□□□□□ -0.15
VIM-208ENST00000497849 TCN1P20061 433 aaPredicted RBP14.14□□□□□ -0.15
VIM-208ENST00000497849 SELENOPP49908 381 aa14.14□□□□□ -0.15
VIM-208ENST00000497849 SEC24CP53992 1094 aa14.14□□□□□ -0.15
VIM-208ENST00000497849 TMEM33P57088 247 aa14.14□□□□□ -0.15
VIM-208ENST00000497849 GABPB1Q06547 395 aaPredicted RBP14.14□□□□□ -0.15
VIM-208ENST00000497849 SNTB2Q13425 540 aaKnown RBP14.14□□□□□ -0.15
VIM-208ENST00000497849 AP1ARQ63HQ0 302 aa14.14□□□□□ -0.15
VIM-208ENST00000497849 LRRC34Q8IZ02 419 aa14.14□□□□□ -0.15
VIM-208ENST00000497849 SFXN5Q8TD22 340 aa14.14□□□□□ -0.15
VIM-208ENST00000497849 TUBGCP3Q96CW5 907 aa14.14□□□□□ -0.15
VIM-208ENST00000497849 NSRP1Q9H0G5 558 aaKnown RBP14.14□□□□□ -0.15
VIM-208ENST00000497849 AKTIPQ9H8T0 292 aa14.14□□□□□ -0.15
VIM-208ENST00000497849 NOX3Q9HBY0 568 aa14.14□□□□□ -0.15
VIM-208ENST00000497849 OSGIN1Q9UJX0 560 aa14.14□□□□□ -0.15
VIM-208ENST00000497849 TMED7Q9Y3B3 224 aa14.14□□□□□ -0.15
VIM-208ENST00000497849 USH1CQ9Y6N9 552 aa14.14□□□□□ -0.15
VIM-208ENST00000497849 M0R233 179 aa14.13□□□□□ -0.15
VIM-208ENST00000497849 HDAC3O15379 428 aa14.13□□□□□ -0.15
VIM-208ENST00000497849 PLPP2O43688 288 aa14.13□□□□□ -0.15
VIM-208ENST00000497849 EDF1O60869 148 aaKnown RBP14.13□□□□□ -0.15
VIM-208ENST00000497849 AKR7A3O95154 331 aa14.13□□□□□ -0.15
VIM-208ENST00000497849 FSHBP01225 129 aa14.13□□□□□ -0.15
VIM-208ENST00000497849 IDH2P48735 452 aaKnown RBP14.13□□□□□ -0.15
VIM-208ENST00000497849 EVX1P49640 407 aa14.13□□□□□ -0.15
VIM-208ENST00000497849 DAG1Q14118 895 aa14.13□□□□□ -0.15
VIM-208ENST00000497849 OCLNQ16625 522 aa14.13□□□□□ -0.15
VIM-208ENST00000497849 TUSC1Q2TAM9 212 aa14.13□□□□□ -0.15
VIM-208ENST00000497849 ARHGAP11BQ3KRB8 267 aa14.13□□□□□ -0.15
VIM-208ENST00000497849 C6orf136Q5SQH8 315 aa14.13□□□□□ -0.15
VIM-208ENST00000497849 KRT80Q6KB66 452 aa14.13□□□□□ -0.15
VIM-208ENST00000497849 RNF165Q6ZSG1 346 aa14.13□□□□□ -0.15
VIM-208ENST00000497849 NANPQ8TBE9 248 aa14.13□□□□□ -0.15
VIM-208ENST00000497849 DDIT4LQ96D03 193 aa14.13□□□□□ -0.15
VIM-208ENST00000497849 C1orf50Q9BV19 199 aa14.13□□□□□ -0.15
VIM-208ENST00000497849 MS4A5Q9H3V2 200 aa14.13□□□□□ -0.15
VIM-208ENST00000497849 PIF1Q9H611 641 aa14.13□□□□□ -0.15
VIM-208ENST00000497849 NTN4Q9HB63 628 aa14.13□□□□□ -0.15
VIM-208ENST00000497849 MOV10Q9HCE1 1003 aaKnown RBP14.13□□□□□ -0.15
VIM-208ENST00000497849 SLC35A3Q9Y2D2 325 aa14.13□□□□□ -0.15
VIM-208ENST00000497849 CMAHPQ9Y471 501 aa14.13□□□□□ -0.15
VIM-208ENST00000497849 KMT2CQ8NEZ4 4911 aaKnown RBP14.13□□□□□ -0.15
VIM-208ENST00000497849 A0A0G2JMP0 313 aa14.12□□□□□ -0.15
VIM-208ENST00000497849 A0A0X1KG70 313 aa14.12□□□□□ -0.15
VIM-208ENST00000497849 CLDN24A6NM45 220 aa14.12□□□□□ -0.15
VIM-208ENST00000497849 TMEM229AB2RXF0 380 aa14.12□□□□□ -0.15
VIM-208ENST00000497849 AP3D1O14617 1153 aa14.12□□□□□ -0.15
VIM-208ENST00000497849 PPIHO43447 177 aaKnown RBP14.12□□□□□ -0.15
VIM-208ENST00000497849 RP2O75695 350 aa14.12□□□□□ -0.15
VIM-208ENST00000497849 NCR1O76036 304 aa14.12□□□□□ -0.15
VIM-208ENST00000497849 PRSS23O95084 383 aa14.12□□□□□ -0.15
VIM-208ENST00000497849 MPZL1O95297 269 aa14.12□□□□□ -0.15
VIM-208ENST00000497849 AK1P00568 194 aa14.12□□□□□ -0.15
VIM-208ENST00000497849 HOXB1P14653 301 aaPredicted RBP14.12□□□□□ -0.15
VIM-208ENST00000497849 DRD4P21917 467 aa14.12□□□□□ -0.15
VIM-208ENST00000497849 MATN1P21941 496 aa14.12□□□□□ -0.15
VIM-208ENST00000497849 EPHA3P29320 983 aa14.12□□□□□ -0.15
VIM-208ENST00000497849 HPCAL1P37235 193 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms