RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 KBTBD11-OT1A0A1B0GTJ5 212 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 SERPINE3A8MV23 424 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 A8MX80 341 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 ZNF879B4DU55 563 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 LOC110117498-PIK3R3F6TDL0 507 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 POLR3GO15318 223 aaPredicted RBP3.7□□□□□ -1.82
VPS13A-212ENST00000493341 ZNF254O75437 659 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 KRT34O76011 436 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 RENP00797 406 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 NPR2P20594 1047 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 IL2RGP31785 369 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 LONP1P36776 959 aaKnown RBP3.7□□□□□ -1.82
VPS13A-212ENST00000493341 NSG1P42857 185 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 CX3CR1P49238 355 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 HILS1P60008 231 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 YWHAGP61981 247 aaKnown RBP eCLIP3.7□□□□□ -1.82
VPS13A-212ENST00000493341 CHRNB3Q05901 458 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 TMEM30BQ3MIR4 351 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 SCARA5Q6ZMJ2 495 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 PROKR2Q8NFJ6 384 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 OR5T3Q8NGG3 340 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 NR4A3Q92570 626 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 TMEM59Q9BXS4 323 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 MRPL37Q9BZE1 423 aaKnown RBP3.7□□□□□ -1.82
VPS13A-212ENST00000493341 ZBP1Q9H171 429 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 SYNDIG1Q9H7V2 258 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 MIEF1Q9NQG6 463 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 DHRS4-AS1Q9P1J3 65 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 MYEF2Q9P2K5 600 aaKnown RBP3.7□□□□□ -1.82
VPS13A-212ENST00000493341 CLN8Q9UBY8 286 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 LSM7Q9UK45 103 aaKnown RBP3.7□□□□□ -1.82
VPS13A-212ENST00000493341 MMP17Q9ULZ9 603 aa3.7□□□□□ -1.82
VPS13A-212ENST00000493341 BIVM-ERCC5R4GMW8 1640 aa3.69□□□□□ -1.82
VPS13A-212ENST00000493341 C12orf71A8MTZ7 269 aa3.69□□□□□ -1.82
VPS13A-212ENST00000493341 SIRPB1O00241 398 aa3.69□□□□□ -1.82
VPS13A-212ENST00000493341 CHST1O43916 411 aa3.69□□□□□ -1.82
VPS13A-212ENST00000493341 CABYRO75952 493 aa3.69□□□□□ -1.82
VPS13A-212ENST00000493341 CCNB2O95067 398 aa3.69□□□□□ -1.82
VPS13A-212ENST00000493341 PIGRP01833 764 aa3.69□□□□□ -1.82
VPS13A-212ENST00000493341 FGGP02679 453 aa3.69□□□□□ -1.82
VPS13A-212ENST00000493341 KLK3P07288 261 aaPredicted RBP3.69□□□□□ -1.82
VPS13A-212ENST00000493341 IVLP07476 585 aa3.69□□□□□ -1.82
VPS13A-212ENST00000493341 CFC1BP0CG36 223 aa3.69□□□□□ -1.82
VPS13A-212ENST00000493341 CFC1P0CG37 223 aa3.69□□□□□ -1.82
VPS13A-212ENST00000493341 TRIM49P0CI25 452 aa3.69□□□□□ -1.82
VPS13A-212ENST00000493341 TRIM49CP0CI26 452 aa3.69□□□□□ -1.82
VPS13A-212ENST00000493341 DPEP1P16444 411 aa3.69□□□□□ -1.82
VPS13A-212ENST00000493341 VHLP40337 213 aa3.69□□□□□ -1.82
VPS13A-212ENST00000493341 SLC1A1P43005 524 aa3.69□□□□□ -1.82
VPS13A-212ENST00000493341 RPL32P62910 135 aaKnown RBP3.69□□□□□ -1.82
VPS13A-212ENST00000493341 HSP90AA4PQ58FG1 418 aa3.69□□□□□ -1.82
VPS13A-212ENST00000493341 MLIPQ5VWP3 458 aa3.69□□□□□ -1.82
VPS13A-212ENST00000493341 ACOT7LQ6ZUV0 252 aa3.69□□□□□ -1.82
VPS13A-212ENST00000493341 TIPARPQ7Z3E1 657 aaKnown RBP3.69□□□□□ -1.82
VPS13A-212ENST00000493341 IQCF2Q8IXL9 164 aa3.69□□□□□ -1.82
VPS13A-212ENST00000493341 ZNF100Q8IYN0 542 aa3.69□□□□□ -1.82
VPS13A-212ENST00000493341 CMTM1Q8IZ96 169 aa3.69□□□□□ -1.82
VPS13A-212ENST00000493341 OR5B3Q8NH48 314 aa3.69□□□□□ -1.82
VPS13A-212ENST00000493341 CCDC26Q8TAB7 109 aa3.69□□□□□ -1.82
VPS13A-212ENST00000493341 VN1R17PQ8TDU5 208 aa3.69□□□□□ -1.82
VPS13A-212ENST00000493341 RAB1CQ92928 201 aa3.69□□□□□ -1.82
VPS13A-212ENST00000493341 MFFQ9GZY8 342 aa3.69□□□□□ -1.82
VPS13A-212ENST00000493341 OR2AG1Q9H205 316 aa3.69□□□□□ -1.82
VPS13A-212ENST00000493341 HEXA-AS1Q9H8Q6 139 aa3.69□□□□□ -1.82
VPS13A-212ENST00000493341 SAMSN1Q9NSI8 373 aaKnown RBP3.69□□□□□ -1.82
VPS13A-212ENST00000493341 GPATCH2LQ9NWQ4 482 aa3.69□□□□□ -1.82
VPS13A-212ENST00000493341 POLA1P09884 1462 aaPredicted RBP3.68□□□□□ -1.82
VPS13A-212ENST00000493341 MROH7-TTC4A0A0A0MT08 1334 aa3.68□□□□□ -1.82
VPS13A-212ENST00000493341 K7ENP7 123 aa3.68□□□□□ -1.82
VPS13A-212ENST00000493341 SIVA1O15304 175 aa3.68□□□□□ -1.82
VPS13A-212ENST00000493341 RNF113AO15541 343 aaKnown RBP3.68□□□□□ -1.82
VPS13A-212ENST00000493341 SCELO95171 688 aa3.68□□□□□ -1.82
VPS13A-212ENST00000493341 GJB5O95377 273 aa3.68□□□□□ -1.82
VPS13A-212ENST00000493341 SHMT2P34897 504 aa3.68□□□□□ -1.82
VPS13A-212ENST00000493341 MRPL19P49406 292 aaKnown RBP3.68□□□□□ -1.82
VPS13A-212ENST00000493341 CCNHP51946 323 aaPredicted RBP3.68□□□□□ -1.82
VPS13A-212ENST00000493341 ERVK-25P63136 954 aa3.68□□□□□ -1.82
VPS13A-212ENST00000493341 RAD51Q06609 339 aa3.68□□□□□ -1.82
VPS13A-212ENST00000493341 CCDC173Q0VFZ6 552 aa3.68□□□□□ -1.82
VPS13A-212ENST00000493341 STK38Q15208 465 aa3.68□□□□□ -1.82
VPS13A-212ENST00000493341 C2CD6Q53TS8 623 aa3.68□□□□□ -1.82
VPS13A-212ENST00000493341 XKR4Q5GH76 650 aa3.68□□□□□ -1.82
VPS13A-212ENST00000493341 Q6ZN92 141 aa3.68□□□□□ -1.82
VPS13A-212ENST00000493341 APOBEC3FQ8IUX4 373 aaKnown RBP3.68□□□□□ -1.82
VPS13A-212ENST00000493341 TCAIMQ8N3R3 496 aa3.68□□□□□ -1.82
VPS13A-212ENST00000493341 FTMTQ8N4E7 242 aa3.68□□□□□ -1.82
VPS13A-212ENST00000493341 ASCC1Q8N9N2 400 aaKnown RBP3.68□□□□□ -1.82
VPS13A-212ENST00000493341 OR1S2Q8NGQ3 325 aa3.68□□□□□ -1.82
VPS13A-212ENST00000493341 ZNF596Q8TC21 504 aa3.68□□□□□ -1.82
VPS13A-212ENST00000493341 SLC7A13Q8TCU3 470 aa3.68□□□□□ -1.82
VPS13A-212ENST00000493341 ITLN1Q8WWA0 313 aa3.68□□□□□ -1.82
VPS13A-212ENST00000493341 ASB9Q96DX5 294 aa3.68□□□□□ -1.82
VPS13A-212ENST00000493341 PAGE5Q96GU1 130 aa3.68□□□□□ -1.82
VPS13A-212ENST00000493341 OR8B4Q96RC9 309 aa3.68□□□□□ -1.82
VPS13A-212ENST00000493341 KLHDC3Q9BQ90 382 aa3.68□□□□□ -1.82
VPS13A-212ENST00000493341 FAIM2Q9BWQ8 316 aa3.68□□□□□ -1.82
VPS13A-212ENST00000493341 BEX1Q9HBH7 125 aa3.68□□□□□ -1.82
VPS13A-212ENST00000493341 DYRK4Q9NR20 520 aa3.68□□□□□ -1.82
VPS13A-212ENST00000493341 OR1A1Q9P1Q5 309 aa3.68□□□□□ -1.82
VPS13A-212ENST00000493341 CHD1O14646 1710 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 171.7 ms