RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 RPL13AP40429 203 aaKnown RBP1.53□□□□□ -2.16
CPSF3-205ENST00000489629 KIR2DS4P43632 304 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 QARSP47897 775 aaKnown RBP1.53□□□□□ -2.16
CPSF3-205ENST00000489629 CCT3P49368 545 aaKnown RBP1.53□□□□□ -2.16
CPSF3-205ENST00000489629 DUSP3P51452 185 aaPredicted RBP1.53□□□□□ -2.16
CPSF3-205ENST00000489629 CRYBB1P53674 252 aaPredicted RBP1.53□□□□□ -2.16
CPSF3-205ENST00000489629 SEC61GP60059 68 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 CSNK1G2P78368 415 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 FGL1Q08830 312 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 ZNF763Q0D2J5 394 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 ASPHQ12797 758 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 MADCAM1Q13477 382 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 DPYSL2Q16555 572 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 LRRC23Q53EV4 343 aaPredicted RBP1.53□□□□□ -2.16
CPSF3-205ENST00000489629 C1orf100Q5SVJ3 147 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 CASC10Q5T4H9 136 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 TET2Q6N021 2002 aaPredicted RBP1.53□□□□□ -2.16
CPSF3-205ENST00000489629 RFLNAQ6ZTI6 216 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 GDPD3Q7L5L3 318 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 PRSS41Q7RTY9 318 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 CDH26Q8IXH8 852 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 LRRC75A-AS1Q8N1F1 130 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 C6orf223Q8N319 242 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 FTMTQ8N4E7 242 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 MFSD9Q8NBP5 474 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 OR51S1Q8NGJ8 323 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 OR13C2Q8NGS9 318 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 PHF10Q8WUB8 498 aaKnown RBP1.53□□□□□ -2.16
CPSF3-205ENST00000489629 SCFD1Q8WVM8 642 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 MAIP1Q8WWC4 291 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 UBE2E3Q969T4 207 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 SEC22AQ96IW7 307 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 C12orf42Q96LP6 360 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 SLC38A2Q96QD8 506 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 HIST1H4GQ99525 98 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 ZBTB18Q99592 522 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 RPAP1Q9BWH6 1393 aaPredicted RBP1.53□□□□□ -2.16
CPSF3-205ENST00000489629 GCOM2Q9BZD3 368 aaPredicted RBP1.53□□□□□ -2.16
CPSF3-205ENST00000489629 RAB34Q9BZG1 259 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 C20orf85Q9H1P6 137 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 REEP4Q9H6H4 257 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 NARFLQ9H6Q4 476 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 AZI2Q9H6S1 392 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 YY1AP1Q9H869 796 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 METTL7AQ9H8H3 244 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 FOLH1BQ9HBA9 442 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 HYPKQ9NX55 129 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 TREM2Q9NZC2 230 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 ADAM28Q9UKQ2 775 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 STAP1Q9ULZ2 295 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 COPS3Q9UNS2 423 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 TP53TG5Q9Y2B4 290 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 NEUROG3Q9Y4Z2 214 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 V9GY05 133 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 A0A096LNJ9 63 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 BTBD17A6NE02 478 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 A6NIZ1 184 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 SNTNA6NMZ2 147 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 GFYI3L273 518 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 UBXN8O00124 270 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 AP3B1O00203 1094 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 POLR2DO15514 142 aaKnown RBP1.52□□□□□ -2.17
CPSF3-205ENST00000489629 UGT1A9O60656 530 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 FCMRO60667 390 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 B4GALT2O60909 372 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 PALMO75781 387 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 UQCRFS1P1P0C7P4 283 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 ATP6V1B2P21281 511 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 ANXA13P27216 316 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 CCR1P32246 355 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 DDOSTP39656 456 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 MAGEA8P43361 318 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 SULT1E1P49888 294 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 ATP1B3P54709 279 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 PKNOX1P55347 436 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 RAP1BP61224 184 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 BEX3Q00994 111 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 BST1Q10588 318 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 DDX39BQ13838 428 aaKnown RBP1.52□□□□□ -2.17
CPSF3-205ENST00000489629 DUSP7Q16829 419 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 PARP15Q460N3 678 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 BCL7AQ4VC05 210 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 CARD16Q5EG05 197 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 PHYHD1Q5SRE7 291 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 CCDC183Q5T5S1 534 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 OR52E8Q6IFG1 317 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 EFL1Q7Z2Z2 1120 aaKnown RBP1.52□□□□□ -2.17
CPSF3-205ENST00000489629 KRTAP13-1Q8IUC0 172 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 ZNF740Q8NDX6 193 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 BHLHE23Q8NDY6 225 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 OR4K14Q8NGD5 310 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 MAGEE2Q8TD90 523 aaPredicted RBP1.52□□□□□ -2.17
CPSF3-205ENST00000489629 BRSK1Q8TDC3 778 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 FGF11Q92914 225 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 FBXO32Q969P5 355 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 RPUSD4Q96CM3 377 aaKnown RBP1.52□□□□□ -2.17
CPSF3-205ENST00000489629 RNF185Q96GF1 192 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 PAGE5Q96GU1 130 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 TIMD4Q96H15 378 aa1.52□□□□□ -2.17
CPSF3-205ENST00000489629 RPRD1AQ96P16 312 aaPredicted RBP1.52□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms