RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 MFSD13AQ14CX5 517 aa13.73□□□□□ -0.21
HMGA1-206ENST00000478214 C9orf135Q5VTT2 229 aa13.73□□□□□ -0.21
HMGA1-206ENST00000478214 NIPAL3Q6P499 406 aa13.73□□□□□ -0.21
HMGA1-206ENST00000478214 TTC33Q6PID6 262 aaPredicted RBP13.73□□□□□ -0.21
HMGA1-206ENST00000478214 PAMR1Q6UXH9 720 aa13.73□□□□□ -0.21
HMGA1-206ENST00000478214 VTCN1Q7Z7D3 282 aa13.73□□□□□ -0.21
HMGA1-206ENST00000478214 ANKS4BQ8N8V4 417 aa13.73□□□□□ -0.21
HMGA1-206ENST00000478214 ADPRHL1Q8NDY3 354 aa13.73□□□□□ -0.21
HMGA1-206ENST00000478214 PLPPR2Q96GM1 343 aa13.73□□□□□ -0.21
HMGA1-206ENST00000478214 MPP4Q96JB8 637 aa13.73□□□□□ -0.21
HMGA1-206ENST00000478214 OXGR1Q96P68 337 aa13.73□□□□□ -0.21
HMGA1-206ENST00000478214 KCTD14Q9BQ13 255 aaPredicted RBP13.73□□□□□ -0.21
HMGA1-206ENST00000478214 USB1Q9BQ65 265 aaKnown RBP13.73□□□□□ -0.21
HMGA1-206ENST00000478214 ASPNQ9BXN1 380 aa13.73□□□□□ -0.21
HMGA1-206ENST00000478214 SLCO5A1Q9H2Y9 848 aa13.73□□□□□ -0.21
HMGA1-206ENST00000478214 SPAG4Q9NPE6 437 aa13.73□□□□□ -0.21
HMGA1-206ENST00000478214 FAM53CQ9NYF3 392 aa13.73□□□□□ -0.21
HMGA1-206ENST00000478214 TAGLN3Q9UI15 199 aa13.73□□□□□ -0.21
HMGA1-206ENST00000478214 CORINQ9Y5Q5 1042 aa13.73□□□□□ -0.21
HMGA1-206ENST00000478214 ROS1P08922 2347 aa13.72□□□□□ -0.21
HMGA1-206ENST00000478214 OR5H1A6NKK0 313 aa13.72□□□□□ -0.21
HMGA1-206ENST00000478214 MS4A18H0YCH9 400 aa13.72□□□□□ -0.21
HMGA1-206ENST00000478214 KPNA4O00629 521 aaPredicted RBP13.72□□□□□ -0.21
HMGA1-206ENST00000478214 OR5F1O95221 314 aa13.72□□□□□ -0.21
HMGA1-206ENST00000478214 ZNF682O95780 498 aa13.72□□□□□ -0.21
HMGA1-206ENST00000478214 HPRP00739 348 aa13.72□□□□□ -0.21
HMGA1-206ENST00000478214 NQO1P15559 274 aaKnown RBP13.72□□□□□ -0.21
HMGA1-206ENST00000478214 NCK1P16333 377 aa13.72□□□□□ -0.21
HMGA1-206ENST00000478214 CLDN17P56750 224 aa13.72□□□□□ -0.21
HMGA1-206ENST00000478214 PMS2P3Q13401 168 aa13.72□□□□□ -0.21
HMGA1-206ENST00000478214 C1DQ13901 141 aaKnown RBP13.72□□□□□ -0.21
HMGA1-206ENST00000478214 GABRA6Q16445 453 aa13.72□□□□□ -0.21
HMGA1-206ENST00000478214 MS4A18Q3C1V0 323 aa13.72□□□□□ -0.21
HMGA1-206ENST00000478214 TIMM23BQ5SRD1 257 aa13.72□□□□□ -0.21
HMGA1-206ENST00000478214 SEZ6L2Q6UXD5 910 aa13.72□□□□□ -0.21
HMGA1-206ENST00000478214 NKAIN4Q8IVV8 208 aa13.72□□□□□ -0.21
HMGA1-206ENST00000478214 RNF148Q8N7C7 305 aa13.72□□□□□ -0.21
HMGA1-206ENST00000478214 POMGNT2Q8NAT1 580 aa13.72□□□□□ -0.21
HMGA1-206ENST00000478214 LZICQ8WZA0 190 aa13.72□□□□□ -0.21
HMGA1-206ENST00000478214 ZNF426Q9BUY5 554 aa13.72□□□□□ -0.21
HMGA1-206ENST00000478214 CCM2LQ9NUG4 571 aaPredicted RBP13.72□□□□□ -0.21
HMGA1-206ENST00000478214 MRPL39Q9NYK5 338 aaKnown RBP13.72□□□□□ -0.21
HMGA1-206ENST00000478214 ADA2Q9NZK5 511 aa13.72□□□□□ -0.21
HMGA1-206ENST00000478214 RIMS3Q9UJD0 308 aa13.72□□□□□ -0.21
HMGA1-206ENST00000478214 LOC102725191A0A1B0GVB3 256 aa13.71□□□□□ -0.21
HMGA1-206ENST00000478214 ENO4A6NNW6 628 aa13.71□□□□□ -0.21
HMGA1-206ENST00000478214 TRAF3IP2O43734 574 aaPredicted RBP13.71□□□□□ -0.21
HMGA1-206ENST00000478214 FAM107AO95990 144 aa13.71□□□□□ -0.21
HMGA1-206ENST00000478214 CH25HO95992 272 aa13.71□□□□□ -0.21
HMGA1-206ENST00000478214 PLAUP00749 431 aa13.71□□□□□ -0.21
HMGA1-206ENST00000478214 MT-ATP6P00846 226 aa13.71□□□□□ -0.21
HMGA1-206ENST00000478214 SERPINA1P01009 418 aa13.71□□□□□ -0.21
HMGA1-206ENST00000478214 HLA-DOBP13765 273 aa13.71□□□□□ -0.21
HMGA1-206ENST00000478214 DNASE1P24855 282 aa13.71□□□□□ -0.21
HMGA1-206ENST00000478214 NR1H2P55055 460 aa13.71□□□□□ -0.21
HMGA1-206ENST00000478214 FOXD4Q12950 439 aaPredicted RBP13.71□□□□□ -0.21
HMGA1-206ENST00000478214 PPA1Q15181 289 aa13.71□□□□□ -0.21
HMGA1-206ENST00000478214 ZNF74Q16587 644 aa13.71□□□□□ -0.21
HMGA1-206ENST00000478214 CBLL1Q75N03 491 aa13.71□□□□□ -0.21
HMGA1-206ENST00000478214 SCAIQ8N9R8 606 aa13.71□□□□□ -0.21
HMGA1-206ENST00000478214 NINJ1Q92982 152 aa13.71□□□□□ -0.21
HMGA1-206ENST00000478214 FAM162AQ96A26 154 aa13.71□□□□□ -0.21
HMGA1-206ENST00000478214 MUCL1Q96DR8 90 aa13.71□□□□□ -0.21
HMGA1-206ENST00000478214 MUS81Q96NY9 551 aa13.71□□□□□ -0.21
HMGA1-206ENST00000478214 POLR2J2Q9GZM3 115 aaKnown RBP13.71□□□□□ -0.21
HMGA1-206ENST00000478214 POLR2J3Q9H1A7 115 aaKnown RBP13.71□□□□□ -0.21
HMGA1-206ENST00000478214 MEPEQ9NQ76 525 aaPredicted RBP13.71□□□□□ -0.21
HMGA1-206ENST00000478214 EGFL7Q9UHF1 273 aa13.71□□□□□ -0.21
HMGA1-206ENST00000478214 EDARQ9UNE0 448 aa13.71□□□□□ -0.21
HMGA1-206ENST00000478214 RCE1Q9Y256 329 aa13.71□□□□□ -0.21
HMGA1-206ENST00000478214 SNX13Q9Y5W8 968 aa13.71□□□□□ -0.21
HMGA1-206ENST00000478214 A0A1W2PR80 420 aa13.7□□□□□ -0.22
HMGA1-206ENST00000478214 PLPP3O14495 311 aa13.7□□□□□ -0.22
HMGA1-206ENST00000478214 UPK3AO75631 287 aa13.7□□□□□ -0.22
HMGA1-206ENST00000478214 KRT33AO76009 404 aa13.7□□□□□ -0.22
HMGA1-206ENST00000478214 ZNF432O94892 652 aa13.7□□□□□ -0.22
HMGA1-206ENST00000478214 ATE1O95260 518 aa13.7□□□□□ -0.22
HMGA1-206ENST00000478214 RAF1P04049 648 aa13.7□□□□□ -0.22
HMGA1-206ENST00000478214 MPGP29372 298 aa13.7□□□□□ -0.22
HMGA1-206ENST00000478214 YAP1P46937 504 aaKnown RBP13.7□□□□□ -0.22
HMGA1-206ENST00000478214 UGT2B15P54855 530 aa13.7□□□□□ -0.22
HMGA1-206ENST00000478214 SLC25A3Q00325 362 aa13.7□□□□□ -0.22
HMGA1-206ENST00000478214 PUDPQ08623 228 aa13.7□□□□□ -0.22
HMGA1-206ENST00000478214 KEAP1Q14145 624 aa13.7□□□□□ -0.22
HMGA1-206ENST00000478214 TESK1Q15569 626 aa13.7□□□□□ -0.22
HMGA1-206ENST00000478214 GKAP1Q5VSY0 366 aaPredicted RBP13.7□□□□□ -0.22
HMGA1-206ENST00000478214 OR7E24Q6IFN5 339 aa13.7□□□□□ -0.22
HMGA1-206ENST00000478214 NHLRC1Q6VVB1 395 aa13.7□□□□□ -0.22
HMGA1-206ENST00000478214 ZNF704Q6ZNC4 412 aaPredicted RBP13.7□□□□□ -0.22
HMGA1-206ENST00000478214 LINGO2Q7L985 606 aa13.7□□□□□ -0.22
HMGA1-206ENST00000478214 P2RY8Q86VZ1 359 aa13.7□□□□□ -0.22
HMGA1-206ENST00000478214 UEVLDQ8IX04 471 aa13.7□□□□□ -0.22
HMGA1-206ENST00000478214 FITM2Q8N6M3 262 aa13.7□□□□□ -0.22
HMGA1-206ENST00000478214 LRRC17Q8N6Y2 441 aa13.7□□□□□ -0.22
HMGA1-206ENST00000478214 FAM156AQ8NDB6 213 aa13.7□□□□□ -0.22
HMGA1-206ENST00000478214 OR5J2Q8NH18 312 aa13.7□□□□□ -0.22
HMGA1-206ENST00000478214 OR52N5Q8NH56 324 aa13.7□□□□□ -0.22
HMGA1-206ENST00000478214 PFN4Q8NHR9 129 aa13.7□□□□□ -0.22
HMGA1-206ENST00000478214 TMEM255BQ8WV15 326 aa13.7□□□□□ -0.22
HMGA1-206ENST00000478214 HSH2DQ96JZ2 352 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms