RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 PNMTP11086 282 aa10.65□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 BMP4P12644 408 aa10.65□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 ETS2P15036 469 aa10.65□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 USF1P22415 310 aaPredicted RBP10.65□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 THBS2P35442 1172 aa10.65□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 HOXC5Q00444 222 aa10.65□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 NAAAQ02083 359 aa10.65□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 FADDQ13158 208 aa10.65□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 EFNB3Q15768 340 aa10.65□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 ADIPOQQ15848 244 aa10.65□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 ZNF311Q5JNZ3 666 aa10.65□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 LRIF1Q5T3J3 769 aa10.65□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 CYB5R2Q6BCY4 276 aa10.65□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 NXNQ6DKJ4 435 aa10.65□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 HDXQ7Z353 690 aa10.65□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 COMTD1Q86VU5 262 aa10.65□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 C10orf111Q8N326 155 aa10.65□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 KDM8Q8N371 416 aa10.65□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 MAL2Q969L2 176 aa10.65□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 KTI12Q96EK9 354 aaPredicted RBP10.65□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 SORCS2Q96PQ0 1159 aa10.65□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 TAPBPLQ9BX59 468 aa10.65□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 PLK3Q9H4B4 646 aa10.65□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 CA10Q9NS85 328 aa10.65□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 SLC25A37Q9NYZ2 338 aa10.65□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 CDC42EP3Q9UKI2 254 aa10.65□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 RCE1Q9Y256 329 aa10.65□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 IGKV1D-42A0A075B6H8 117 aa10.64□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 TRBV5-3A0A0A0MS03 114 aa10.64□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 B9A039 149 aa10.64□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 NDUFS8O00217 210 aa10.64□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 IGFBP1P08833 259 aaPredicted RBP10.64□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 CECR9P0C854 216 aa10.64□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 CDH2P19022 906 aaPredicted RBP10.64□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 CALCRP30988 508 aa10.64□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 PRKAR1BP31321 381 aa10.64□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 SERPINF1P36955 418 aa10.64□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 SH3BGRP55822 239 aaPredicted RBP10.64□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 MAGOHP61326 146 aaKnown RBP10.64□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 LSM11P83369 360 aaKnown RBP eCLIP10.64□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 HGFACQ04756 655 aa10.64□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 NIPAL3Q6P499 406 aa10.64□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 BLOC1S3Q6QNY0 202 aa10.64□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 KLHL24Q6TFL4 600 aa10.64□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 MIER2Q8N344 545 aa10.64□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 GOLGA6L1Q8N7Z2 621 aa10.64□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 MGARPQ8TDB4 240 aa10.64□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 TAAR8Q969N4 342 aa10.64□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 FBXO17Q96EF6 278 aa10.64□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 ZNF837Q96EG3 531 aaPredicted RBP10.64□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 SLC41A3Q96GZ6 507 aa10.64□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 OXGR1Q96P68 337 aa10.64□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 ALKBH3Q96Q83 286 aaPredicted RBP10.64□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 PRR14Q9BWN1 585 aa10.64□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 ARMC7Q9H6L4 198 aa10.64□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 SEC61A2Q9H9S3 476 aa10.64□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 TMBIM4Q9HC24 238 aa10.64□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 NKIRAS1Q9NYS0 192 aa10.64□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 SLAMF8Q9P0V8 285 aa10.64□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 SEC14L4Q9UDX3 406 aa10.64□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 TMEM129A0AVI4 362 aa10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 ZNF503-AS2A6NEH8 195 aa10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 MS4A18H0YCH9 400 aa10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 TPST2O60704 377 aa10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 AHSA1O95433 338 aa10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 ANP32DO95626 131 aa10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 ARAFP10398 606 aa10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 CBR1P16152 277 aa10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 NCF2P19878 526 aaPredicted RBP10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 HTR2AP28223 471 aa10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 NR4A2P43354 598 aa10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 RPS5P46782 204 aaKnown RBP10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 CLDN17P56750 224 aa10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 ROR2Q01974 943 aaKnown RBP10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 MS4A18Q3C1V0 323 aa10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 FAM69AQ5T7M9 428 aa10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 AGBL2Q5U5Z8 902 aa10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 DHRS4L2Q6PKH6 230 aa10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 SLC2A7Q6PXP3 512 aa10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 C5orf46Q6UWT4 87 aa10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 ZNF627Q7L945 461 aa10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 MYPOPQ86VE0 399 aaPredicted RBP10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 TMEM123Q8N131 208 aa10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 ADPRHL1Q8NDY3 354 aa10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 NUP37Q8NFH4 326 aa10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 OR4F15Q8NGB8 312 aa10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 OR6S1Q8NH40 331 aa10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 BBS10Q8TAM1 723 aa10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 SLC38A4Q969I6 547 aa10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 ZNF75AQ96N20 296 aa10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 KCNK17Q96T54 332 aa10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 DOK1Q99704 481 aa10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 RAD21L1Q9H4I0 556 aa10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 VIPAS39Q9H9C1 493 aa10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 GPR35Q9HC97 309 aa10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 MOV10Q9HCE1 1003 aaKnown RBP10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 B3GNT2Q9NY97 397 aa10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 USH1CQ9Y6N9 552 aa10.63□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 A0A096LPE4 126 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 A0A1B0GWA3 101 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms