RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 SERTAD4Q9NUC0 356 aa3.95□□□□□ -1.78
USP4-209ENST00000475873 LMBRD1Q9NUN5 540 aa3.95□□□□□ -1.78
USP4-209ENST00000475873 ACOXLQ9NUZ1 547 aa3.95□□□□□ -1.78
USP4-209ENST00000475873 EXD2Q9NVH0 621 aa3.95□□□□□ -1.78
USP4-209ENST00000475873 DDX18Q9NVP1 670 aaKnown RBP3.95□□□□□ -1.78
USP4-209ENST00000475873 PARPBPQ9NWS1 579 aa3.95□□□□□ -1.78
USP4-209ENST00000475873 SENP1Q9P0U3 644 aa3.95□□□□□ -1.78
USP4-209ENST00000475873 IFNKQ9P0W0 207 aa3.95□□□□□ -1.78
USP4-209ENST00000475873 KCNE5Q9UJ90 142 aa3.95□□□□□ -1.78
USP4-209ENST00000475873 MRTO4Q9UKD2 239 aaKnown RBP3.95□□□□□ -1.78
USP4-209ENST00000475873 SLC12A4Q9UP95 1085 aa3.95□□□□□ -1.78
USP4-209ENST00000475873 TRIM33Q9UPN9 1127 aa3.95□□□□□ -1.78
USP4-209ENST00000475873 MTO1Q9Y2Z2 717 aaKnown RBP3.95□□□□□ -1.78
USP4-209ENST00000475873 IGHV1-69DA0A0B4J2H0 117 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 A0A1W2PRX2 142 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 TRIM64CA6NLI5 447 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 SUPT3HB4E1H0 165 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 H0YHG0 523 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 RPL36A-HNRNPH2H7BZ11 118 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 PPP6CO00743 305 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 DNPH1O43598 174 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 SPRY3O43610 288 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 UGDHO60701 494 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 GUCY1B2O75343 617 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 SUPT3HO75486 399 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 IPO7O95373 1038 aaKnown RBP3.94□□□□□ -1.78
USP4-209ENST00000475873 IGHV1-69P01742 117 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 TPM3P06753 285 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 HOXB1P14653 301 aaPredicted RBP3.94□□□□□ -1.78
USP4-209ENST00000475873 IVDP26440 423 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 MPIP34949 423 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 CFHR2P36980 270 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 TGFBR2P37173 567 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 KIR2DS4P43632 304 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 MMP15P51511 669 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 CCR4P51679 360 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 NCBP2P52298 156 aaKnown RBP eCLIP3.94□□□□□ -1.78
USP4-209ENST00000475873 BPIFB3P59826 476 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 GNB2P62879 340 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 TRA2BP62995 288 aaKnown RBP3.94□□□□□ -1.78
USP4-209ENST00000475873 PHEXP78562 749 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 GALK2Q01415 458 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 EMX1Q04741 257 aaPredicted RBP3.94□□□□□ -1.78
USP4-209ENST00000475873 PIGFQ07326 219 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 TRAF3Q13114 568 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 RASA2Q15283 850 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 ESCO2Q56NI9 601 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 SPANXN3Q5MJ09 141 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 PHYHD1Q5SRE7 291 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 TEX35Q5T0J7 233 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 RNASEH2BQ5TBB1 312 aaKnown RBP3.94□□□□□ -1.78
USP4-209ENST00000475873 TTC27Q6P3X3 843 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 CRIP3Q6Q6R5 217 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 LRIG3Q6UXM1 1119 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 C4orf22Q6V702 233 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 LHFPL2Q6ZUX7 228 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 RPS27LQ71UM5 84 aaKnown RBP3.94□□□□□ -1.78
USP4-209ENST00000475873 ZNF551Q7Z340 670 aaPredicted RBP3.94□□□□□ -1.78
USP4-209ENST00000475873 PEX26Q7Z412 305 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 MTERF4Q7Z6M4 381 aaKnown RBP3.94□□□□□ -1.78
USP4-209ENST00000475873 LCA5Q86VQ0 697 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 EPHX4Q8IUS5 362 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 DDIASQ8IXT1 998 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 TMEM99Q8N816 258 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 IL17RDQ8NFM7 739 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 C16orf78Q8WTQ4 265 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 RCC1LQ96I51 464 aaKnown RBP3.94□□□□□ -1.78
USP4-209ENST00000475873 NSUN5Q96P11 429 aaKnown RBP3.94□□□□□ -1.78
USP4-209ENST00000475873 GPR78Q96P69 363 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 BBS4Q96RK4 519 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 NUDT16L1Q9BRJ7 211 aaKnown RBP3.94□□□□□ -1.78
USP4-209ENST00000475873 PCGF1Q9BSM1 259 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 THUMPD3Q9BV44 507 aaKnown RBP3.94□□□□□ -1.78
USP4-209ENST00000475873 FAIM2Q9BWQ8 316 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 SSBP3Q9BWW4 388 aaPredicted RBP3.94□□□□□ -1.78
USP4-209ENST00000475873 PCDHAC1Q9H158 963 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 OR51B6Q9H340 312 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 CENPHQ9H3R5 247 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 IPPKQ9H8X2 491 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 DECR2Q9NUI1 292 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 ACER3Q9NUN7 267 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 NUDT4Q9NZJ9 180 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 ZNRD1Q9P1U0 126 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 CHRNA9Q9UGM1 479 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 LRCH1Q9Y2L9 728 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 HDGFL3Q9Y3E1 203 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 KCNE3Q9Y6H6 103 aa3.94□□□□□ -1.78
USP4-209ENST00000475873 A0A1B0GW55 424 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 SERTM1A2A2V5 107 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 SMTNL1A8MU46 457 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 MIF4GDA9UHW6 222 aaKnown RBP3.93□□□□□ -1.78
USP4-209ENST00000475873 SLC43A1O75387 559 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 JTBO76095 146 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 AKR7A3O95154 331 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 ZNF205O95201 554 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 ESRRBO95718 433 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 PDYNP01213 254 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 MT-ND5P03915 603 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 PATE4P0C8F1 98 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 DUX4L2P0CJ85 424 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms