RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 FAM98AQ8NCA5 519 aaKnown RBP11.56□□□□□ -0.56
VPS13D-205ENST00000473099 MOSPD2Q8NHP6 518 aa11.56□□□□□ -0.56
VPS13D-205ENST00000473099 CRELD1Q96HD1 420 aa11.56□□□□□ -0.56
VPS13D-205ENST00000473099 TMEM80Q96HE8 168 aa11.56□□□□□ -0.56
VPS13D-205ENST00000473099 SIGLEC12Q96PQ1 595 aa11.56□□□□□ -0.56
VPS13D-205ENST00000473099 SNX18Q96RF0 628 aa11.56□□□□□ -0.56
VPS13D-205ENST00000473099 SCNM1Q9BWG6 230 aa11.56□□□□□ -0.56
VPS13D-205ENST00000473099 CDCA4Q9BXL8 241 aa11.56□□□□□ -0.56
VPS13D-205ENST00000473099 ZNF552Q9H707 407 aaPredicted RBP11.56□□□□□ -0.56
VPS13D-205ENST00000473099 CHST11Q9NPF2 352 aa11.56□□□□□ -0.56
VPS13D-205ENST00000473099 FANCFQ9NPI8 374 aa11.56□□□□□ -0.56
VPS13D-205ENST00000473099 INIPQ9NRY2 104 aa11.56□□□□□ -0.56
VPS13D-205ENST00000473099 QPCTLQ9NXS2 382 aa11.56□□□□□ -0.56
VPS13D-205ENST00000473099 ERVK-18Q9QC07 812 aa11.56□□□□□ -0.56
VPS13D-205ENST00000473099 GRHPRQ9UBQ7 328 aa11.56□□□□□ -0.56
VPS13D-205ENST00000473099 ALPK2Q86TB3 2170 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 ZNF407Q9C0G0 2248 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 A0A1W2PRG6 482 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 OR2M5A3KFT3 312 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 A6NL46 340 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 H3BML4 177 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 M0R082 166 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 PLPP3O14495 311 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 KLK10O43240 276 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 RNF13O43567 381 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 EFNA2O43921 213 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 CEACAM4O75871 244 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 PMS2P2O95744 297 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 RAB36O95755 333 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 FADS2O95864 444 aaKnown RBP11.55□□□□□ -0.56
VPS13D-205ENST00000473099 PCMT1P22061 227 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 GDF1P27539 372 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 MLLT10P55197 1068 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 CSNK2A1P68400 391 aaPredicted RBP11.55□□□□□ -0.56
VPS13D-205ENST00000473099 SLC35A1P78382 337 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 ARG2P78540 354 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 TLE3Q04726 772 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.55□□□□□ -0.56
VPS13D-205ENST00000473099 PUDPQ08623 228 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 FOXO1Q12778 655 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 POU4F2Q12837 409 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 MYBPHQ13203 477 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 ITGADQ13349 1161 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 TOMM20Q15388 145 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 OR7A5Q15622 319 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 NEDD8Q15843 81 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 ZNF239Q16600 458 aaKnown RBP11.55□□□□□ -0.56
VPS13D-205ENST00000473099 HYAL4Q2M3T9 481 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 SLC35D3Q5M8T2 416 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 LCN1P1Q5VSP4 162 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 C1QL3Q5VWW1 255 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 FAM205BPQ63HN1 556 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 NIPAL3Q6P499 406 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 PLBD1Q6P4A8 553 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 IGFL2Q6UWQ7 119 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 MEPCEQ7L2J0 689 aaKnown RBP11.55□□□□□ -0.56
VPS13D-205ENST00000473099 HDDC2Q7Z4H3 204 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 ADCK1Q86TW2 530 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 JAZF1Q86VZ6 243 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 ATP6V1C2Q8NEY4 427 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 OR52E2Q8NGJ4 325 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 OR14L1PQ8NHC6 308 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 ZNF417Q8TAU3 575 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 RORBQ92753 470 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 ARL5BQ96KC2 179 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 OR5B2Q96R09 309 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 ZNF587Q96SQ5 575 aaPredicted RBP11.55□□□□□ -0.56
VPS13D-205ENST00000473099 NPAS1Q99742 590 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 RACGAP1Q9H0H5 632 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 TXNIPQ9H3M7 391 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 AMBNQ9NP70 447 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 FGF20Q9NP95 211 aaPredicted RBP11.55□□□□□ -0.56
VPS13D-205ENST00000473099 DEPPQ9NTK1 212 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 CHCHD3Q9NX63 227 aaKnown RBP11.55□□□□□ -0.56
VPS13D-205ENST00000473099 TAS2R5Q9NYW4 299 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 DKK4Q9UBT3 224 aa11.55□□□□□ -0.56
VPS13D-205ENST00000473099 DIMT1Q9UNQ2 313 aaKnown RBP11.55□□□□□ -0.56
VPS13D-205ENST00000473099 A0A0G2JMM0 328 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 A0A1W2PNV4 684 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 A0A1W2PPB8 328 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 A0A1W2PRS3 328 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 KIR3DP1A8MWS1 328 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 SULT2B1O00204 365 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 EIF1BO60739 113 aaKnown RBP11.54□□□□□ -0.56
VPS13D-205ENST00000473099 SLC2A10O95528 541 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 RENP00797 406 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 STSP08842 583 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 IMPDH2P12268 514 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 HIST1H1CP16403 213 aaKnown RBP11.54□□□□□ -0.56
VPS13D-205ENST00000473099 WT1P19544 449 aaPredicted RBP11.54□□□□□ -0.56
VPS13D-205ENST00000473099 DAP3P51398 398 aaKnown RBP11.54□□□□□ -0.56
VPS13D-205ENST00000473099 CCL11P51671 97 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 GTF2A1P52655 376 aaPredicted RBP11.54□□□□□ -0.56
VPS13D-205ENST00000473099 SLC25A1P53007 311 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 GPR85P60893 370 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 RPL27P61353 136 aaKnown RBP11.54□□□□□ -0.56
VPS13D-205ENST00000473099 ERVK-25P63136 954 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 EMX1Q04741 257 aaPredicted RBP11.54□□□□□ -0.56
VPS13D-205ENST00000473099 SRSF6Q13247 344 aaKnown RBP11.54□□□□□ -0.56
VPS13D-205ENST00000473099 KRR1Q13601 381 aaKnown RBP11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms