RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 HMGB4Q8WW32 186 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 LINC01599Q8WXQ3 324 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 NECAP2Q9NVZ3 263 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 SPTBN2O15020 2390 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 ADRA2CP18825 462 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 SRMP19623 302 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 SFXN2Q96NB2 322 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 ALOXE3Q9BYJ1 711 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 GLIS2Q9BZE0 524 aaPredicted RBP12.42□□□□□ -0.42
COL6A3-209ENST00000472056 V9GYS6 101 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 SIGLEC1Q9BZZ2 1709 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 ITGB2P05107 769 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 HOXC13P31276 330 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 C15orf39Q6ZRI6 1047 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 TMUB2Q71RG4 321 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 PRSS58Q8IYP2 241 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 ACVR1CQ8NER5 493 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 OR6K3Q8NGY3 331 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 OR52D1Q9H346 318 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 A0A1W2PRU2 124 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 FOXD2O60548 495 aaPredicted RBP12.42□□□□□ -0.42
COL6A3-209ENST00000472056 SLC2A1P11166 492 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 C21orf33P30042 268 aaPredicted RBP12.42□□□□□ -0.42
COL6A3-209ENST00000472056 CYB5D2Q8WUJ1 264 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 RPL3LQ92901 407 aaKnown RBP12.42□□□□□ -0.42
COL6A3-209ENST00000472056 TMIGD2Q96BF3 282 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 LPAR4Q99677 370 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 SUSD2Q9UGT4 822 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 DCDC2BA2VCK2 349 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 YY2O15391 372 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 LCATP04180 440 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 ADH4P08319 380 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 PODNL1Q6PEZ8 512 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 SLC46A3Q7Z3Q1 461 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 NAGSQ8N159 534 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 DCLRE1CQ96SD1 692 aaKnown RBP12.41□□□□□ -0.42
COL6A3-209ENST00000472056 TTTY10Q9BZA0 68 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 CPEB1Q9BZB8 566 aaKnown RBP12.41□□□□□ -0.42
COL6A3-209ENST00000472056 ARV1Q9H2C2 271 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 PRDM9Q9NQV7 894 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 UBQLN4Q9NRR5 601 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 KCNG2Q9UJ96 466 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 MCTS1Q9ULC4 181 aaKnown RBP12.41□□□□□ -0.42
COL6A3-209ENST00000472056 CORINQ9Y5Q5 1042 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 ZNF541Q9H0D2 1346 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 POLEQ07864 2286 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 FBXO24O75426 580 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 CCL23P55773 120 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 EMC4Q5J8M3 183 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 MBOAT2Q6ZWT7 520 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 TSLPQ969D9 159 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 SGIP1Q9BQI5 828 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 HAO2Q9NYQ3 351 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 SRPK3Q9UPE1 567 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 DOCK6Q96HP0 2047 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 A0A0D9SEW6 157 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 A0A1B0GUH1 482 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 SOD2P04179 222 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 MGST1P10620 155 aaKnown RBP12.41□□□□□ -0.42
COL6A3-209ENST00000472056 SSTR2P30874 369 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 PTGER4P35408 488 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 PIWIL3Q7Z3Z3 882 aaKnown RBP12.41□□□□□ -0.42
COL6A3-209ENST00000472056 FAM217AQ8IXS0 508 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 JAM3Q9BX67 310 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 GPR174Q9BXC1 333 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 POFUT1Q9H488 388 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 RNF19AQ9NV58 838 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 FREM3P0C091 2139 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 ARFGEF1Q9Y6D6 1849 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 KDM4FA0A1W2PPD8 638 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 MCRIP1C9JLW8 97 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 LEFTY1O75610 366 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 FUT1P19526 365 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 FRMD1Q8N878 549 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 METTL9Q9H1A3 318 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 ZNF443Q9Y2A4 671 aaPredicted RBP12.41□□□□□ -0.42
COL6A3-209ENST00000472056 KIR2DS1A0A191URI9 304 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 M0QZK8 103 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 GGCTO75223 188 aaKnown RBP12.41□□□□□ -0.42
COL6A3-209ENST00000472056 CPEP16870 476 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 IL3RAP26951 378 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 KIR2DS4P43632 304 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 KIAA0141Q14154 515 aaPredicted RBP12.41□□□□□ -0.42
COL6A3-209ENST00000472056 KIR2DS1Q14954 304 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 PM20D1Q6GTS8 502 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 FCRLAQ7L513 359 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 CMTM2Q8TAZ6 248 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 CTRCQ99895 268 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 CRB3Q9BUF7 120 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 CDCA4Q9BXL8 241 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 DPH1Q9BZG8 443 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 ACKR4Q9NPB9 350 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 OSGIN1Q9UJX0 560 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 SNED1Q8TER0 1413 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 MYOCOSA0A1B0GUC4 107 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 I6L893 689 aaPredicted RBP12.41□□□□□ -0.42
COL6A3-209ENST00000472056 H2AFB1P0C5Y9 115 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 ADPRMQ3LIE5 342 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 OVCH1Q7RTY7 1134 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 SENP5Q96HI0 755 aaPredicted RBP12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms