RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 RCE1Q9Y256 329 aa14.46□□□□□ -0.09
CCDC28B-204ENST00000469003 GMEB1Q9Y692 573 aa14.46□□□□□ -0.09
CCDC28B-204ENST00000469003 ARPC4-TTLL3A0A0A6YYG9 625 aa14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 IGHV1-18A0A0C4DH31 117 aa14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 NR5A2O00482 541 aa14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 OR2T1O43869 369 aa14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 UPK3AO75631 287 aa14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 CSF3P09919 207 aa14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 SLC25A16P16260 332 aa14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 ZNF43P17038 809 aa14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 EFNA4P52798 201 aa14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 SH3BGRP55822 239 aaPredicted RBP14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 CLDN17P56750 224 aa14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 UBE2NP61088 152 aaKnown RBP14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 CDK6Q00534 326 aa14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 LOXL1Q08397 574 aaPredicted RBP14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 PAGE3Q5JUK9 113 aa14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 HMBOX1Q6NT76 420 aa14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 REEP3Q6NUK4 255 aa14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 ANKRD16Q6P6B7 361 aa14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 DHRS4L2Q6PKH6 230 aa14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 KRT73Q86Y46 540 aa14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 KDM8Q8N371 416 aa14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 FAM168AQ92567 244 aa14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 SLC38A4Q969I6 547 aa14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 OXGR1Q96P68 337 aa14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 TNFRSF13CQ96RJ3 184 aa14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 KCNS3Q9BQ31 491 aa14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 EBF4Q9BQW3 602 aa14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 KATNB1Q9BVA0 655 aa14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 SPATA5L1Q9BVQ7 753 aa14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 SLCO1B3Q9NPD5 702 aa14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 SLC52A3Q9NQ40 469 aa14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 CCDC167Q9P0B6 97 aa14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 VAPAQ9P0L0 249 aa14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 CRNNQ9UBG3 495 aaPredicted RBP14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 SONP18583 2426 aaKnown RBP14.45□□□□□ -0.1
CCDC28B-204ENST00000469003 TRBV5-3A0A0A0MS03 114 aa14.44□□□□□ -0.1
CCDC28B-204ENST00000469003 A0A1B0GWA3 101 aa14.44□□□□□ -0.1
CCDC28B-204ENST00000469003 AIM2O14862 343 aa14.44□□□□□ -0.1
CCDC28B-204ENST00000469003 GPRIN2O60269 458 aa14.44□□□□□ -0.1
CCDC28B-204ENST00000469003 ZNF432O94892 652 aa14.44□□□□□ -0.1
CCDC28B-204ENST00000469003 HOXB1P14653 301 aaPredicted RBP14.44□□□□□ -0.1
CCDC28B-204ENST00000469003 HTR2AP28223 471 aa14.44□□□□□ -0.1
CCDC28B-204ENST00000469003 ROR2Q01974 943 aaKnown RBP14.44□□□□□ -0.1
CCDC28B-204ENST00000469003 SWI5Q1ZZU3 235 aa14.44□□□□□ -0.1
CCDC28B-204ENST00000469003 MST1LQ2TV78 715 aa14.44□□□□□ -0.1
CCDC28B-204ENST00000469003 C3orf36Q3SXR2 165 aa14.44□□□□□ -0.1
CCDC28B-204ENST00000469003 FAM69AQ5T7M9 428 aa14.44□□□□□ -0.1
CCDC28B-204ENST00000469003 COMTD1Q86VU5 262 aa14.44□□□□□ -0.1
CCDC28B-204ENST00000469003 HIPK1Q86Z02 1210 aa14.44□□□□□ -0.1
CCDC28B-204ENST00000469003 C10orf111Q8N326 155 aa14.44□□□□□ -0.1
CCDC28B-204ENST00000469003 ANKK1Q8NFD2 765 aa14.44□□□□□ -0.1
CCDC28B-204ENST00000469003 C10orf105Q8TEF2 133 aa14.44□□□□□ -0.1
CCDC28B-204ENST00000469003 DNAJA4Q8WW22 397 aaPredicted RBP14.44□□□□□ -0.1
CCDC28B-204ENST00000469003 TAAR8Q969N4 342 aa14.44□□□□□ -0.1
CCDC28B-204ENST00000469003 FBXO17Q96EF6 278 aa14.44□□□□□ -0.1
CCDC28B-204ENST00000469003 NELFAQ9H3P2 528 aa14.44□□□□□ -0.1
CCDC28B-204ENST00000469003 MOV10Q9HCE1 1003 aaKnown RBP14.44□□□□□ -0.1
CCDC28B-204ENST00000469003 B3GAT1Q9P2W7 334 aa14.44□□□□□ -0.1
CCDC28B-204ENST00000469003 SEC14L4Q9UDX3 406 aa14.44□□□□□ -0.1
CCDC28B-204ENST00000469003 CORO2BQ9UQ03 480 aa14.44□□□□□ -0.1
CCDC28B-204ENST00000469003 ARFGEF3Q5TH69 2177 aa14.43□□□□□ -0.1
CCDC28B-204ENST00000469003 TRAV36DV7A0A075B6V5 113 aa14.43□□□□□ -0.1
CCDC28B-204ENST00000469003 A0A096LPE4 126 aa14.43□□□□□ -0.1
CCDC28B-204ENST00000469003 A0A1W2PPZ6 126 aa14.43□□□□□ -0.1
CCDC28B-204ENST00000469003 A8MV72 311 aaPredicted RBP14.43□□□□□ -0.1
CCDC28B-204ENST00000469003 RPL36A-HNRNPH2H7BZ11 118 aa14.43□□□□□ -0.1
CCDC28B-204ENST00000469003 M0R082 166 aa14.43□□□□□ -0.1
CCDC28B-204ENST00000469003 TPST1O60507 370 aa14.43□□□□□ -0.1
CCDC28B-204ENST00000469003 SLC43A1O75387 559 aa14.43□□□□□ -0.1
CCDC28B-204ENST00000469003 F12P00748 615 aaPredicted RBP14.43□□□□□ -0.1
CCDC28B-204ENST00000469003 CRYAAP02489 173 aa14.43□□□□□ -0.1
CCDC28B-204ENST00000469003 GPX2P18283 190 aa14.43□□□□□ -0.1
CCDC28B-204ENST00000469003 ATP4BP51164 291 aa14.43□□□□□ -0.1
CCDC28B-204ENST00000469003 AQP5P55064 265 aa14.43□□□□□ -0.1
CCDC28B-204ENST00000469003 TMEM249Q2WGJ8 235 aa14.43□□□□□ -0.1
CCDC28B-204ENST00000469003 ALG10BQ5I7T1 473 aa14.43□□□□□ -0.1
CCDC28B-204ENST00000469003 FAM91A1Q658Y4 838 aa14.43□□□□□ -0.1
CCDC28B-204ENST00000469003 NET1Q7Z628 596 aaPredicted RBP14.43□□□□□ -0.1
CCDC28B-204ENST00000469003 FAM169BQ8N8A8 192 aa14.43□□□□□ -0.1
CCDC28B-204ENST00000469003 ZNF417Q8TAU3 575 aa14.43□□□□□ -0.1
CCDC28B-204ENST00000469003 PROX1Q92786 737 aa14.43□□□□□ -0.1
CCDC28B-204ENST00000469003 ZNF587Q96SQ5 575 aaPredicted RBP14.43□□□□□ -0.1
CCDC28B-204ENST00000469003 IKZF5Q9H5V7 419 aa14.43□□□□□ -0.1
CCDC28B-204ENST00000469003 TMEM38AQ9H6F2 299 aa14.43□□□□□ -0.1
CCDC28B-204ENST00000469003 TESQ9UGI8 421 aaKnown RBP14.43□□□□□ -0.1
CCDC28B-204ENST00000469003 YLPM1P49750 1951 aaKnown RBP14.43□□□□□ -0.1
CCDC28B-204ENST00000469003 IGKV1D-42A0A075B6H8 117 aa14.42□□□□□ -0.1
CCDC28B-204ENST00000469003 LOC102725191A0A1B0GVB3 256 aa14.42□□□□□ -0.1
CCDC28B-204ENST00000469003 PRORSD1PA6NEY8 169 aa14.42□□□□□ -0.1
CCDC28B-204ENST00000469003 EVPLLA8MZ36 301 aa14.42□□□□□ -0.1
CCDC28B-204ENST00000469003 IGLV1-44P01699 117 aa14.42□□□□□ -0.1
CCDC28B-204ENST00000469003 CECR9P0C854 216 aa14.42□□□□□ -0.1
CCDC28B-204ENST00000469003 GRPRP30550 384 aa14.42□□□□□ -0.1
CCDC28B-204ENST00000469003 NCALDP61601 193 aa14.42□□□□□ -0.1
CCDC28B-204ENST00000469003 TUBA1BP68363 451 aa14.42□□□□□ -0.1
CCDC28B-204ENST00000469003 TUBA4AP68366 448 aa14.42□□□□□ -0.1
CCDC28B-204ENST00000469003 VLDLRP98155 873 aa14.42□□□□□ -0.1
CCDC28B-204ENST00000469003 NAAAQ02083 359 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms