RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	SDHD	O14521	159 aa		9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	GSN	P06396	782 aa		9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	TFPT	P0C1Z6	253 aa		9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	PNMT	P11086	282 aa		9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	HOXB1	P14653	301 aa	Predicted RBP	9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	DAO	P14920	347 aa		9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	CBR1	P16152	277 aa		9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	IL7R	P16871	459 aa		9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	LBP	P18428	481 aa		9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	CXCR1	P25024	350 aa		9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	S100A3	P33764	101 aa		9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	RPL14	P50914	215 aa	Known RBP	9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	NME5	P56597	212 aa		9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	ROR2	Q01974	943 aa	Known RBP	9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	POU3F1	Q03052	451 aa	Predicted RBP	9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	MPP2	Q14168	576 aa		9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	CARTPT	Q16568	116 aa		9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	IQCC	Q4KMZ1	466 aa		9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	WBP2NL	Q6ICG8	309 aa		9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	NIPAL3	Q6P499	406 aa		9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	VHLL	Q6RSH7	139 aa		9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	NHLRC1	Q6VVB1	395 aa		9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	DEF8	Q6ZN54	512 aa		9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	WDFY1	Q8IWB7	410 aa		9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	ZNF440	Q8IYI8	595 aa		9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	KDM8	Q8N371	416 aa		9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	SVOPL	Q8N434	492 aa		9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	KIRREL3-AS3	Q8N7Y1	241 aa	Predicted RBP	9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	ZNF540	Q8NDQ6	660 aa		9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	OR4F15	Q8NGB8	312 aa		9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	OR52P1P	Q8NH57	321 aa		9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	PNPT1	Q8TCS8	783 aa	Known RBP	9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	PANX1	Q96RD7	426 aa		9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	NUF2	Q9BZD4	464 aa		9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	NOX3	Q9HBY0	568 aa		9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	ADPRHL2	Q9NX46	363 aa		9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	RCE1	Q9Y256	329 aa		9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	RASD1	Q9Y272	281 aa		9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	ZNF443	Q9Y2A4	671 aa	Predicted RBP	9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	GPR45	Q9Y5Y3	372 aa		9.64	□□□□□ -0.87
PTPN7-204	ENST00000462815	TRRAP	Q9Y4A5	3859 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	WDR91	A4D1P6	747 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	OR6C65	A6NJZ3	312 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	LYNX1	G3V0Z9	82 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	BIRC5	O15392	142 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	TCF21	O43680	179 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	LYNX1	P0DP58	116 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	ETFA	P13804	333 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	UQCRB	P14927	111 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	NPR2	P20594	1047 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	APEX1	P27695	318 aa	Known RBP	9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	CHN2	P52757	468 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	SH3BGR	P55822	239 aa	Predicted RBP	9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	UBE2N	P61088	152 aa	Known RBP	9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	ARF1	P84077	181 aa	Known RBP	9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	RUNX1T1	Q06455	604 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	LIN52	Q52LA3	116 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	RPS26P11	Q5JNZ5	115 aa	Predicted RBP	9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	ELFN2	Q5R3F8	820 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	PHYHD1	Q5SRE7	291 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	PRAMEF8	Q5VWM4	474 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	PRAMEF7	Q5VXH5	474 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	LIPN	Q5VXI9	398 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	TMEM225	Q6GV28	225 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	C6orf89	Q6UWU4	347 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	SERPINA11	Q86U17	422 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	PEX5L	Q8IYB4	626 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	TMEM123	Q8N131	208 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	GOLGA6L1	Q8N7Z2	621 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	LINC01356	Q8N9X3	169 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	MFSD8	Q8NHS3	518 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	STK35	Q8TDR2	534 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	SLC38A5	Q8WUX1	472 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	NEU4	Q8WWR8	484 aa	Predicted RBP	9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	VPS33A	Q96AX1	596 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	KTI12	Q96EK9	354 aa	Predicted RBP	9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	SNX18	Q96RF0	628 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	RACGAP1	Q9H0H5	632 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	RAB1B	Q9H0U4	201 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	GPR35	Q9HC97	309 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	PNPO	Q9NVS9	261 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	B3GNT2	Q9NY97	397 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	ZNF224	Q9NZL3	707 aa		9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	TMEFF2	Q9UIK5	374 aa	Predicted RBP	9.63	□□□□□ -0.87
PTPN7-204	ENST00000462815	IGKV1D-42	A0A075B6H8	117 aa		9.62	□□□□□ -0.87
PTPN7-204	ENST00000462815		A0A096LPI6	279 aa		9.62	□□□□□ -0.87
PTPN7-204	ENST00000462815	WIPF1	O43516	503 aa		9.62	□□□□□ -0.87
PTPN7-204	ENST00000462815	TRAF3IP2	O43734	574 aa	Predicted RBP	9.62	□□□□□ -0.87
PTPN7-204	ENST00000462815	VENTX	O95231	258 aa		9.62	□□□□□ -0.87
PTPN7-204	ENST00000462815	NR2F1	P10589	423 aa		9.62	□□□□□ -0.87
PTPN7-204	ENST00000462815	HOXB9	P17482	250 aa	Predicted RBP	9.62	□□□□□ -0.87
PTPN7-204	ENST00000462815	BGN	P21810	368 aa		9.62	□□□□□ -0.87
PTPN7-204	ENST00000462815	CFP	P27918	469 aa		9.62	□□□□□ -0.87
PTPN7-204	ENST00000462815	SLC1A6	P48664	564 aa		9.62	□□□□□ -0.87
PTPN7-204	ENST00000462815	SLC18A1	P54219	525 aa		9.62	□□□□□ -0.87
PTPN7-204	ENST00000462815	DVL1P1	P54792	670 aa	Predicted RBP	9.62	□□□□□ -0.87
PTPN7-204	ENST00000462815	GNA13	Q14344	377 aa		9.62	□□□□□ -0.87
PTPN7-204	ENST00000462815	GTDC1	Q4AE62	458 aa		9.62	□□□□□ -0.87
PTPN7-204	ENST00000462815	ZNF621	Q6ZSS3	439 aa		9.62	□□□□□ -0.87
PTPN7-204	ENST00000462815	MDP1	Q86V88	176 aa		9.62	□□□□□ -0.87

Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms