RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 RNF180Q86T96 592 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 BIVMQ86UB2 503 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 OR5T2Q8NGG2 359 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 C3orf49Q96BT1 292 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 VRK1Q99986 396 aaPredicted RBP10.73□□□□□ -0.69
CPSF3-202ENST00000460593 TLNRD1Q9H1K6 362 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 SLC25A32Q9H2D1 315 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 HCFC1R1Q9NWW0 138 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 NCDNQ9UBB6 729 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 TRAPPC13A5PLN9 417 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 ZNF879B4DU55 563 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 SPINT1O43278 529 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 AQP8O94778 261 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 OLFM2O95897 454 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 APOC1P02654 83 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 NGFRP08138 427 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 HIST1H1TP22492 207 aaPredicted RBP10.73□□□□□ -0.69
CPSF3-202ENST00000460593 AKR1C3P42330 323 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 PPIAP62937 165 aaKnown RBP10.73□□□□□ -0.69
CPSF3-202ENST00000460593 BLOC1S1P78537 153 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 IRF5Q13568 498 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 PLEKHN1Q494U1 663 aaPredicted RBP10.73□□□□□ -0.69
CPSF3-202ENST00000460593 RAB12Q6IQ22 244 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 DPPA4Q7L190 304 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 BEST3Q8N1M1 668 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 THAP6Q8TBB0 222 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 RXFP4Q8TDU9 374 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 PAQR8Q8TEZ7 354 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 DTD2Q96FN9 168 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 TSSK2Q96PF2 358 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 NMNAT3Q96T66 252 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 LGR4Q9BXB1 951 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 TMEM74BQ9NUR3 256 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 IER3IP1Q9Y5U9 82 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 PLXNA2O75051 1894 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 TRAV8-7A0A075B6U6 113 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 TRAV18A0A075B6X5 111 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.73□□□□□ -0.69
CPSF3-202ENST00000460593 TMEM218A2RU14 115 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 ADAM11O75078 769 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 RBBP9O75884 186 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 ACTL6AO96019 429 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 ZNF806P0C7X5 589 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 OR8G3PP0DMU2 310 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 APEHP13798 732 aaKnown RBP10.73□□□□□ -0.69
CPSF3-202ENST00000460593 PRKAR2AP13861 404 aaKnown RBP10.73□□□□□ -0.69
CPSF3-202ENST00000460593 SYN1P17600 705 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 CD53P19397 219 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 AK4P27144 223 aaPredicted RBP10.73□□□□□ -0.69
CPSF3-202ENST00000460593 HTRA4P83105 476 aaPredicted RBP10.73□□□□□ -0.69
CPSF3-202ENST00000460593 MLC1Q15049 377 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 C17orf99Q6UX52 265 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 ETV3LQ6ZN32 361 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 NUDT18Q6ZVK8 323 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 MOB3CQ70IA8 216 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 DCUN1D3Q8IWE4 304 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 TMEFF1Q8IYR6 380 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 GJD3Q8N144 294 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 OR51A4Q8NGJ6 313 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 SFT2D1Q8WV19 159 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 HAVCR1Q96D42 359 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 HSPA12BQ96MM6 686 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 SLC19A3Q9BZV2 496 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 ADAP2Q9NPF8 381 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 INPP5EQ9NRR6 644 aa10.73□□□□□ -0.69
CPSF3-202ENST00000460593 FADS1O60427 444 aa10.72□□□□□ -0.69
CPSF3-202ENST00000460593 RCBTB2O95199 551 aa10.72□□□□□ -0.69
CPSF3-202ENST00000460593 ATXN8OSP0DMR3 200 aa10.72□□□□□ -0.69
CPSF3-202ENST00000460593 RPA2P15927 270 aa10.72□□□□□ -0.69
CPSF3-202ENST00000460593 LY6G5CQ5SRR4 150 aa10.72□□□□□ -0.69
CPSF3-202ENST00000460593 JMJD6Q6NYC1 403 aaPredicted RBP10.72□□□□□ -0.69
CPSF3-202ENST00000460593 STAC2Q6ZMT1 411 aa10.72□□□□□ -0.69
CPSF3-202ENST00000460593 ZNF511Q8NB15 262 aa10.72□□□□□ -0.69
CPSF3-202ENST00000460593 KCT2Q8NC54 265 aa10.72□□□□□ -0.69
CPSF3-202ENST00000460593 STEAP2Q8NFT2 490 aa10.72□□□□□ -0.69
CPSF3-202ENST00000460593 OR51D1Q8NGF3 324 aa10.72□□□□□ -0.69
CPSF3-202ENST00000460593 NUS1Q96E22 293 aa10.72□□□□□ -0.69
CPSF3-202ENST00000460593 IGSF21Q96ID5 467 aa10.72□□□□□ -0.69
CPSF3-202ENST00000460593 ACTRT3Q9BYD9 372 aa10.72□□□□□ -0.69
CPSF3-202ENST00000460593 BIN3Q9NQY0 253 aa10.72□□□□□ -0.69
CPSF3-202ENST00000460593 FAM96BQ9Y3D0 163 aa10.72□□□□□ -0.69
CPSF3-202ENST00000460593 HCFC2Q9Y5Z7 792 aa10.72□□□□□ -0.69
CPSF3-202ENST00000460593 RFPL4AA6NLU0 287 aa10.72□□□□□ -0.69
CPSF3-202ENST00000460593 RFPL4AL1F8VTS6 287 aa10.72□□□□□ -0.69
CPSF3-202ENST00000460593 PAPLNO95428 1278 aa10.72□□□□□ -0.69
CPSF3-202ENST00000460593 LAMP2P13473 410 aa10.72□□□□□ -0.69
CPSF3-202ENST00000460593 RBM39Q14498 530 aaKnown RBP10.72□□□□□ -0.69
CPSF3-202ENST00000460593 TRMT12Q53H54 448 aaKnown RBP10.72□□□□□ -0.69
CPSF3-202ENST00000460593 PAN3Q58A45 887 aaKnown RBP10.72□□□□□ -0.69
CPSF3-202ENST00000460593 TPGS2Q68CL5 300 aa10.72□□□□□ -0.69
CPSF3-202ENST00000460593 H3F3CQ6NXT2 135 aa10.72□□□□□ -0.69
CPSF3-202ENST00000460593 ZAR1Q86SH2 424 aa10.72□□□□□ -0.69
CPSF3-202ENST00000460593 C12orf45Q8N5I9 185 aaPredicted RBP10.72□□□□□ -0.69
CPSF3-202ENST00000460593 OR1J2Q8NGS2 313 aa10.72□□□□□ -0.69
CPSF3-202ENST00000460593 OR2L2Q8NH16 312 aa10.72□□□□□ -0.69
CPSF3-202ENST00000460593 MS4A6EQ96DS6 147 aa10.72□□□□□ -0.69
CPSF3-202ENST00000460593 DNAJA3Q96EY1 480 aa10.72□□□□□ -0.69
CPSF3-202ENST00000460593 CNN2Q99439 309 aaKnown RBP10.72□□□□□ -0.69
CPSF3-202ENST00000460593 PDCD10Q9BUL8 212 aa10.72□□□□□ -0.69
CPSF3-202ENST00000460593 PRDM7Q9NQW5 492 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms