RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 NRF1Q16656 503 aa10.55□□□□□ -0.72
USP40-210ENST00000454354 CYP51A1Q16850 503 aa10.55□□□□□ -0.72
USP40-210ENST00000454354 TRMT5Q32P41 509 aaKnown RBP10.55□□□□□ -0.72
USP40-210ENST00000454354 COQ5Q5HYK3 327 aa10.55□□□□□ -0.72
USP40-210ENST00000454354 C9orf135Q5VTT2 229 aa10.55□□□□□ -0.72
USP40-210ENST00000454354 RANBP3LQ86VV4 465 aaPredicted RBP10.55□□□□□ -0.72
USP40-210ENST00000454354 SLC30A8Q8IWU4 369 aa10.55□□□□□ -0.72
USP40-210ENST00000454354 TAAR8Q969N4 342 aa10.55□□□□□ -0.72
USP40-210ENST00000454354 SLC25A36Q96CQ1 311 aa10.55□□□□□ -0.72
USP40-210ENST00000454354 SLC47A1Q96FL8 570 aa10.55□□□□□ -0.72
USP40-210ENST00000454354 SLC41A3Q96GZ6 507 aa10.55□□□□□ -0.72
USP40-210ENST00000454354 ARHGDIGQ99819 225 aa10.55□□□□□ -0.72
USP40-210ENST00000454354 WFDC6Q9BQY6 131 aa10.55□□□□□ -0.72
USP40-210ENST00000454354 TMEM120AQ9BXJ8 343 aa10.55□□□□□ -0.72
USP40-210ENST00000454354 OBP2BQ9NPH6 170 aa10.55□□□□□ -0.72
USP40-210ENST00000454354 FAIMQ9NVQ4 179 aa10.55□□□□□ -0.72
USP40-210ENST00000454354 KLHL14Q9P2G3 628 aa10.55□□□□□ -0.72
USP40-210ENST00000454354 SEC14L4Q9UDX3 406 aa10.55□□□□□ -0.72
USP40-210ENST00000454354 B3GALT5Q9Y2C3 310 aa10.55□□□□□ -0.72
USP40-210ENST00000454354 ABCA1O95477 2261 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 LOC102725191A0A1B0GVB3 256 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 ZNF587BE7ETH6 402 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 RPL36A-HNRNPH2H7BZ11 118 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 M0R082 166 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 FBP2O00757 339 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 TRAF3IP2O43734 574 aaPredicted RBP10.54□□□□□ -0.72
USP40-210ENST00000454354 LGI1O95970 557 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 WNT11O96014 354 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 ZNF43P17038 809 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 GRPRP30550 384 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 CDKN1AP38936 164 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 GZMMP51124 257 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 PRPS1P60891 318 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 MFSD13AQ14CX5 517 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 DUSP7Q16829 419 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 C11orf71Q6IPW1 123 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 CGB2Q6NT52 195 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 NIPAL3Q6P499 406 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 CLEC9AQ6UXN8 241 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 LINGO2Q7L985 606 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 PATL1Q86TB9 770 aaKnown RBP10.54□□□□□ -0.72
USP40-210ENST00000454354 SCAIQ8N9R8 606 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 ANKK1Q8NFD2 765 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 GPR32P1Q8NGA4 272 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 OR1K1Q8NGR3 316 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 ZNF417Q8TAU3 575 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 MAGEE2Q8TD90 523 aaPredicted RBP10.54□□□□□ -0.72
USP40-210ENST00000454354 GTPBP3Q969Y2 492 aaKnown RBP10.54□□□□□ -0.72
USP40-210ENST00000454354 TRMT61AQ96FX7 289 aaKnown RBP10.54□□□□□ -0.72
USP40-210ENST00000454354 OXGR1Q96P68 337 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 ZNF317Q96PQ6 595 aaPredicted RBP10.54□□□□□ -0.72
USP40-210ENST00000454354 ALKBH3Q96Q83 286 aaPredicted RBP10.54□□□□□ -0.72
USP40-210ENST00000454354 ZNF587Q96SQ5 575 aaPredicted RBP10.54□□□□□ -0.72
USP40-210ENST00000454354 EPYCQ99645 322 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 DHRS9Q9BPW9 319 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 TMEM43Q9BTV4 400 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 PRR14Q9BWN1 585 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 ALG2Q9H553 416 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 TMEM27Q9HBJ8 222 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 ZNF446Q9NWS9 450 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 SLC13A4Q9UKG4 626 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 CORINQ9Y5Q5 1042 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 JMJD1CQ15652 2540 aa10.54□□□□□ -0.72
USP40-210ENST00000454354 SONP18583 2426 aaKnown RBP10.54□□□□□ -0.72
USP40-210ENST00000454354 ARPC4-TTLL3A0A0A6YYG9 625 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 E7EQL1 145 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 M0R1B8 84 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 M0R3H8 397 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 FXYD1O00168 92 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 UPK3AO75631 287 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 IGHV4-39P01824 125 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 BGLAPP02818 100 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 OPN1SWP03999 348 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 TROVE2P10155 538 aaKnown RBP eCLIP10.53□□□□□ -0.72
USP40-210ENST00000454354 CD247P20963 164 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 PAX7P23759 505 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 TTKP33981 857 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 CDH12P55289 794 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 SH3BGRP55822 239 aaPredicted RBP10.53□□□□□ -0.72
USP40-210ENST00000454354 CLDN17P56750 224 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 LTBQ06643 244 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 LGALS3BPQ08380 585 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 NPTX1Q15818 432 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 TBRG1Q3YBR2 411 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 HIKESHIQ53FT3 197 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 INTS11Q5TA45 600 aaKnown RBP10.53□□□□□ -0.72
USP40-210ENST00000454354 AGAP6Q5VW22 663 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 NANOGP8Q6NSW7 305 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 ZNF613Q6PF04 617 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 SLC22A25Q6T423 547 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 KLHL24Q6TFL4 600 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 LINC00114Q6XXX2 140 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 B3GLCTQ6Y288 498 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 DNM1P46Q6ZS02 220 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 H1FNTQ75WM6 255 aaPredicted RBP10.53□□□□□ -0.72
USP40-210ENST00000454354 KDM8Q8N371 416 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 SMYD1Q8NB12 490 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 OR8J3Q8NGG0 315 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 OR10A6Q8NH74 314 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 NELFAQ9H3P2 528 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms