RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 SLC30A8Q8IWU4 369 aa16.98■□□□□ 0.31
USP40-207ENST00000450940 ADPRHL1Q8NDY3 354 aa16.98■□□□□ 0.31
USP40-207ENST00000450940 ANKK1Q8NFD2 765 aa16.98■□□□□ 0.31
USP40-207ENST00000450940 SLC41A3Q96GZ6 507 aa16.98■□□□□ 0.31
USP40-207ENST00000450940 TMEM27Q9HBJ8 222 aa16.98■□□□□ 0.31
USP40-207ENST00000450940 OBP2BQ9NPH6 170 aa16.98■□□□□ 0.31
USP40-207ENST00000450940 KLHL14Q9P2G3 628 aa16.98■□□□□ 0.31
USP40-207ENST00000450940 SEC14L4Q9UDX3 406 aa16.98■□□□□ 0.31
USP40-207ENST00000450940 RCE1Q9Y256 329 aa16.98■□□□□ 0.31
USP40-207ENST00000450940 M0QX08 132 aa16.97■□□□□ 0.31
USP40-207ENST00000450940 M0R1B8 84 aa16.97■□□□□ 0.31
USP40-207ENST00000450940 FBP2O00757 339 aa16.97■□□□□ 0.31
USP40-207ENST00000450940 AIM2O14862 343 aa16.97■□□□□ 0.31
USP40-207ENST00000450940 ZNF43P17038 809 aa16.97■□□□□ 0.31
USP40-207ENST00000450940 PAX7P23759 505 aa16.97■□□□□ 0.31
USP40-207ENST00000450940 GRPRP30550 384 aa16.97■□□□□ 0.31
USP40-207ENST00000450940 CDKN1AP38936 164 aa16.97■□□□□ 0.31
USP40-207ENST00000450940 GZMMP51124 257 aa16.97■□□□□ 0.31
USP40-207ENST00000450940 SPOCK1Q08629 439 aa16.97■□□□□ 0.31
USP40-207ENST00000450940 NFYCQ13952 458 aa16.97■□□□□ 0.31
USP40-207ENST00000450940 MFSD13AQ14CX5 517 aa16.97■□□□□ 0.31
USP40-207ENST00000450940 DUSP7Q16829 419 aa16.97■□□□□ 0.31
USP40-207ENST00000450940 CYP51A1Q16850 503 aa16.97■□□□□ 0.31
USP40-207ENST00000450940 LINC00114Q6XXX2 140 aa16.97■□□□□ 0.31
USP40-207ENST00000450940 H1FNTQ75WM6 255 aaPredicted RBP16.97■□□□□ 0.31
USP40-207ENST00000450940 LINGO2Q7L985 606 aa16.97■□□□□ 0.31
USP40-207ENST00000450940 KDM8Q8N371 416 aa16.97■□□□□ 0.31
USP40-207ENST00000450940 OR1K1Q8NGR3 316 aa16.97■□□□□ 0.31
USP40-207ENST00000450940 MAGEE2Q8TD90 523 aaPredicted RBP16.97■□□□□ 0.31
USP40-207ENST00000450940 BCL2L2Q92843 193 aaPredicted RBP16.97■□□□□ 0.31
USP40-207ENST00000450940 GTPBP3Q969Y2 492 aaKnown RBP16.97■□□□□ 0.31
USP40-207ENST00000450940 ZNF317Q96PQ6 595 aaPredicted RBP16.97■□□□□ 0.31
USP40-207ENST00000450940 ARHGDIGQ99819 225 aa16.97■□□□□ 0.31
USP40-207ENST00000450940 DHRS9Q9BPW9 319 aa16.97■□□□□ 0.31
USP40-207ENST00000450940 TMEM43Q9BTV4 400 aa16.97■□□□□ 0.31
USP40-207ENST00000450940 C1QTNF6Q9BXI9 259 aa16.97■□□□□ 0.31
USP40-207ENST00000450940 TMEM120AQ9BXJ8 343 aa16.97■□□□□ 0.31
USP40-207ENST00000450940 MRGBPQ9NV56 204 aa16.97■□□□□ 0.31
USP40-207ENST00000450940 SLC13A4Q9UKG4 626 aa16.97■□□□□ 0.31
USP40-207ENST00000450940 ALPK2Q86TB3 2170 aa16.96■□□□□ 0.31
USP40-207ENST00000450940 CSPG4Q6UVK1 2322 aa16.96■□□□□ 0.31
USP40-207ENST00000450940 ZNF587BE7ETH6 402 aa16.96■□□□□ 0.31
USP40-207ENST00000450940 RPL36A-HNRNPH2H7BZ11 118 aa16.96■□□□□ 0.31
USP40-207ENST00000450940 M0R082 166 aa16.96■□□□□ 0.31
USP40-207ENST00000450940 UPK3AO75631 287 aa16.96■□□□□ 0.31
USP40-207ENST00000450940 WNT11O96014 354 aa16.96■□□□□ 0.31
USP40-207ENST00000450940 GTF2E2P29084 291 aaKnown RBP16.96■□□□□ 0.31
USP40-207ENST00000450940 TTKP33981 857 aa16.96■□□□□ 0.31
USP40-207ENST00000450940 NCALDP61601 193 aa16.96■□□□□ 0.31
USP40-207ENST00000450940 LGALS3BPQ08380 585 aa16.96■□□□□ 0.31
USP40-207ENST00000450940 NRF1Q16656 503 aa16.96■□□□□ 0.31
USP40-207ENST00000450940 AGAP6Q5VW22 663 aa16.96■□□□□ 0.31
USP40-207ENST00000450940 C11orf71Q6IPW1 123 aa16.96■□□□□ 0.31
USP40-207ENST00000450940 NIPAL3Q6P499 406 aa16.96■□□□□ 0.31
USP40-207ENST00000450940 SLC22A25Q6T423 547 aa16.96■□□□□ 0.31
USP40-207ENST00000450940 NHLRC1Q6VVB1 395 aa16.96■□□□□ 0.31
USP40-207ENST00000450940 DNM1P46Q6ZS02 220 aa16.96■□□□□ 0.31
USP40-207ENST00000450940 RANBP3LQ86VV4 465 aaPredicted RBP16.96■□□□□ 0.31
USP40-207ENST00000450940 DEPDC4Q8N2C3 294 aa16.96■□□□□ 0.31
USP40-207ENST00000450940 GPR32P1Q8NGA4 272 aa16.96■□□□□ 0.31
USP40-207ENST00000450940 ZNF417Q8TAU3 575 aa16.96■□□□□ 0.31
USP40-207ENST00000450940 ZNF587Q96SQ5 575 aaPredicted RBP16.96■□□□□ 0.31
USP40-207ENST00000450940 ZNF446Q9NWS9 450 aa16.96■□□□□ 0.31
USP40-207ENST00000450940 FN1P02751 2386 aaKnown RBP16.95■□□□□ 0.3
USP40-207ENST00000450940 MS4A18H0YCH9 400 aa16.95■□□□□ 0.3
USP40-207ENST00000450940 KRT33AO76009 404 aa16.95■□□□□ 0.3
USP40-207ENST00000450940 IGHV4-39P01824 125 aa16.95■□□□□ 0.3
USP40-207ENST00000450940 BGLAPP02818 100 aa16.95■□□□□ 0.3
USP40-207ENST00000450940 HOXB1P14653 301 aaPredicted RBP16.95■□□□□ 0.3
USP40-207ENST00000450940 PCGF2P35227 344 aa16.95■□□□□ 0.3
USP40-207ENST00000450940 CDH12P55289 794 aa16.95■□□□□ 0.3
USP40-207ENST00000450940 CLDN17P56750 224 aa16.95■□□□□ 0.3
USP40-207ENST00000450940 TNK1Q13470 666 aa16.95■□□□□ 0.3
USP40-207ENST00000450940 TRMT5Q32P41 509 aaKnown RBP16.95■□□□□ 0.3
USP40-207ENST00000450940 MS4A18Q3C1V0 323 aa16.95■□□□□ 0.3
USP40-207ENST00000450940 TBRG1Q3YBR2 411 aa16.95■□□□□ 0.3
USP40-207ENST00000450940 HIKESHIQ53FT3 197 aa16.95■□□□□ 0.3
USP40-207ENST00000450940 COQ5Q5HYK3 327 aa16.95■□□□□ 0.3
USP40-207ENST00000450940 NANOGP8Q6NSW7 305 aa16.95■□□□□ 0.3
USP40-207ENST00000450940 ZNF613Q6PF04 617 aa16.95■□□□□ 0.3
USP40-207ENST00000450940 B3GLCTQ6Y288 498 aa16.95■□□□□ 0.3
USP40-207ENST00000450940 PATL1Q86TB9 770 aaKnown RBP16.95■□□□□ 0.3
USP40-207ENST00000450940 SCAIQ8N9R8 606 aa16.95■□□□□ 0.3
USP40-207ENST00000450940 SMYD1Q8NB12 490 aa16.95■□□□□ 0.3
USP40-207ENST00000450940 EPYCQ99645 322 aa16.95■□□□□ 0.3
USP40-207ENST00000450940 ALG2Q9H553 416 aa16.95■□□□□ 0.3
USP40-207ENST00000450940 NANOGQ9H9S0 305 aa16.95■□□□□ 0.3
USP40-207ENST00000450940 SELENONQ9NZV5 590 aa16.95■□□□□ 0.3
USP40-207ENST00000450940 CORINQ9Y5Q5 1042 aa16.95■□□□□ 0.3
USP40-207ENST00000450940 ARPC4-TTLL3A0A0A6YYG9 625 aa16.94■□□□□ 0.3
USP40-207ENST00000450940 SMAD7O15105 426 aaKnown RBP16.94■□□□□ 0.3
USP40-207ENST00000450940 TRAF3IP2O43734 574 aaPredicted RBP16.94■□□□□ 0.3
USP40-207ENST00000450940 NPPAP01160 153 aa16.94■□□□□ 0.3
USP40-207ENST00000450940 TROVE2P10155 538 aaKnown RBP eCLIP16.94■□□□□ 0.3
USP40-207ENST00000450940 CDH2P19022 906 aaPredicted RBP16.94■□□□□ 0.3
USP40-207ENST00000450940 CD247P20963 164 aa16.94■□□□□ 0.3
USP40-207ENST00000450940 SH3BGRP55822 239 aaPredicted RBP16.94■□□□□ 0.3
USP40-207ENST00000450940 CYLC2Q14093 348 aaPredicted RBP16.94■□□□□ 0.3
USP40-207ENST00000450940 NPTX1Q15818 432 aa16.94■□□□□ 0.3
USP40-207ENST00000450940 CLEC12BQ2HXU8 276 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms