RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 SHFQ7M4L6 423 aa12.87□□□□□ -0.35
USP39-207ENST00000450066 PSD4Q8NDX1 1056 aa12.87□□□□□ -0.35
USP39-207ENST00000450066 OR51G2Q8NGK0 314 aa12.87□□□□□ -0.35
USP39-207ENST00000450066 OR1J4Q8NGS1 313 aa12.87□□□□□ -0.35
USP39-207ENST00000450066 RASD2Q96D21 266 aa12.87□□□□□ -0.35
USP39-207ENST00000450066 DNAJA3Q96EY1 480 aa12.87□□□□□ -0.35
USP39-207ENST00000450066 ARL5BQ96KC2 179 aa12.87□□□□□ -0.35
USP39-207ENST00000450066 Q96M85 177 aa12.87□□□□□ -0.35
USP39-207ENST00000450066 NMNAT3Q96T66 252 aa12.87□□□□□ -0.35
USP39-207ENST00000450066 SACM1LQ9NTJ5 587 aa12.87□□□□□ -0.35
USP39-207ENST00000450066 ANKRD10Q9NXR5 420 aa12.87□□□□□ -0.35
USP39-207ENST00000450066 TNFRSF10DQ9UBN6 386 aa12.87□□□□□ -0.35
USP39-207ENST00000450066 GRHPRQ9UBQ7 328 aa12.87□□□□□ -0.35
USP39-207ENST00000450066 CPAMD8Q8IZJ3 1885 aa12.86□□□□□ -0.35
USP39-207ENST00000450066 PLPP3O14495 311 aa12.86□□□□□ -0.35
USP39-207ENST00000450066 TRIM3O75382 744 aaPredicted RBP12.86□□□□□ -0.35
USP39-207ENST00000450066 LIMS3P0CW19 117 aa12.86□□□□□ -0.35
USP39-207ENST00000450066 LIMS4P0CW20 117 aa12.86□□□□□ -0.35
USP39-207ENST00000450066 CLUP10909 449 aa12.86□□□□□ -0.35
USP39-207ENST00000450066 LIPCP11150 499 aa12.86□□□□□ -0.35
USP39-207ENST00000450066 IL11P20809 199 aa12.86□□□□□ -0.35
USP39-207ENST00000450066 RGS6P49758 472 aa12.86□□□□□ -0.35
USP39-207ENST00000450066 DSCR4P56555 118 aaPredicted RBP12.86□□□□□ -0.35
USP39-207ENST00000450066 RPS7P62081 194 aaKnown RBP12.86□□□□□ -0.35
USP39-207ENST00000450066 C3orf33Q6P1S2 294 aa12.86□□□□□ -0.35
USP39-207ENST00000450066 PAQR6Q6TCH4 344 aa12.86□□□□□ -0.35
USP39-207ENST00000450066 SCAIQ8N9R8 606 aa12.86□□□□□ -0.35
USP39-207ENST00000450066 CLEC1AQ8NC01 280 aa12.86□□□□□ -0.35
USP39-207ENST00000450066 LSM14AQ8ND56 463 aaKnown RBP12.86□□□□□ -0.35
USP39-207ENST00000450066 GNRHR2Q96P88 292 aa12.86□□□□□ -0.35
USP39-207ENST00000450066 TSPAN32Q96QS1 320 aa12.86□□□□□ -0.35
USP39-207ENST00000450066 NMNAT2Q9BZQ4 307 aa12.86□□□□□ -0.35
USP39-207ENST00000450066 SEC14L4Q9UDX3 406 aa12.86□□□□□ -0.35
USP39-207ENST00000450066 PTPRBP23467 1997 aa12.86□□□□□ -0.35
USP39-207ENST00000450066 OR6C68A6NDL8 312 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 CBR3O75828 277 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 OR6A2O95222 327 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 SCG5P05408 212 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 ITGA3P26006 1051 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 DPP4P27487 766 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 IDUAP35475 653 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 SLC16A1P53985 500 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 ABHD17BQ5VST6 288 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 B3GLCTQ6Y288 498 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 JAZF1Q86VZ6 243 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 ZNF227Q86WZ6 799 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 GTPBP8Q8N3Z3 284 aaPredicted RBP12.85□□□□□ -0.35
USP39-207ENST00000450066 OR9Q1Q8NGQ5 310 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 ZNF417Q8TAU3 575 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 SLC25A43Q8WUT9 341 aaPredicted RBP12.85□□□□□ -0.35
USP39-207ENST00000450066 ZNF587Q96SQ5 575 aaPredicted RBP12.85□□□□□ -0.35
USP39-207ENST00000450066 INIPQ9NRY2 104 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 DLL3Q9NYJ7 618 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 FAM186AA6NE01 2351 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 LIPT2A6NK58 231 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 G3V3Y1 287 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 H3BML4 177 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 RNF13O43567 381 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 FZD7O75084 574 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 GYPBP06028 91 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 TFPIP10646 304 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 CDKN2AP42771 156 aaKnown RBP12.85□□□□□ -0.35
USP39-207ENST00000450066 CLK1P49759 484 aaKnown RBP12.85□□□□□ -0.35
USP39-207ENST00000450066 SH3BGRP55822 239 aaPredicted RBP12.85□□□□□ -0.35
USP39-207ENST00000450066 WNT4P56705 351 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 FOXK1P85037 733 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 LGALS3BPQ08380 585 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 POU4F2Q12837 409 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 SELENBP1Q13228 472 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 DOC2BQ14184 412 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 LEG1Q6P5S2 330 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 ATP6V1C2Q8NEY4 427 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 OPALINQ96PE5 141 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 ZNF649Q9BS31 505 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 ERVK13-1Q9NX77 482 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 ABI3Q9P2A4 366 aa12.85□□□□□ -0.35
USP39-207ENST00000450066 EML6Q6ZMW3 1958 aa12.84□□□□□ -0.35
USP39-207ENST00000450066 C11orf98E9PRG8 122 aa12.84□□□□□ -0.35
USP39-207ENST00000450066 CCRL2O00421 344 aa12.84□□□□□ -0.35
USP39-207ENST00000450066 SLC30A4O14863 429 aa12.84□□□□□ -0.35
USP39-207ENST00000450066 IMPDH2P12268 514 aa12.84□□□□□ -0.35
USP39-207ENST00000450066 AHCYP23526 432 aa12.84□□□□□ -0.35
USP39-207ENST00000450066 GTF2E2P29084 291 aaKnown RBP12.84□□□□□ -0.35
USP39-207ENST00000450066 SLC25A1P53007 311 aa12.84□□□□□ -0.35
USP39-207ENST00000450066 OC90Q02509 493 aaPredicted RBP12.84□□□□□ -0.35
USP39-207ENST00000450066 ZP4Q12836 540 aa12.84□□□□□ -0.35
USP39-207ENST00000450066 NFATC3Q12968 1075 aa12.84□□□□□ -0.35
USP39-207ENST00000450066 MYBPHQ13203 477 aa12.84□□□□□ -0.35
USP39-207ENST00000450066 KRR1Q13601 381 aaKnown RBP12.84□□□□□ -0.35
USP39-207ENST00000450066 PON3Q15166 354 aa12.84□□□□□ -0.35
USP39-207ENST00000450066 OR7A5Q15622 319 aa12.84□□□□□ -0.35
USP39-207ENST00000450066 SLC35D3Q5M8T2 416 aa12.84□□□□□ -0.35
USP39-207ENST00000450066 C19orf48Q6RUI8 117 aa12.84□□□□□ -0.35
USP39-207ENST00000450066 H1FNTQ75WM6 255 aaPredicted RBP12.84□□□□□ -0.35
USP39-207ENST00000450066 LHFPL3Q86UP9 236 aa12.84□□□□□ -0.35
USP39-207ENST00000450066 ACBD7Q8N6N7 88 aa12.84□□□□□ -0.35
USP39-207ENST00000450066 JSRP1Q96MG2 331 aaPredicted RBP12.84□□□□□ -0.35
USP39-207ENST00000450066 ADGRL4Q9HBW9 690 aa12.84□□□□□ -0.35
USP39-207ENST00000450066 INPP5EQ9NRR6 644 aa12.84□□□□□ -0.35
USP39-207ENST00000450066 ZNF346Q9UL40 294 aaKnown RBP12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms