RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 PDLIM1O00151 329 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 RAMP1O60894 148 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 AKR7A3O95154 331 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 CD8AP01732 235 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 IGHV4-39P01824 125 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 SLC6A2P23975 617 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 ACAA2P42765 397 aaKnown RBP6.81□□□□□ -1.32
CD44-211ENST00000442151 CDKN2CP42773 168 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 ATP4BP51164 291 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 IL1RL1Q01638 556 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 RGNQ15493 299 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 CHRFAM7AQ494W8 412 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 COX20Q5RI15 118 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 GCNT6Q5T4J0 391 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 FAM91A1Q658Y4 838 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 REP15Q6BDI9 236 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 REEP3Q6NUK4 255 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 NIPAL3Q6P499 406 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 ULK3Q6PHR2 472 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 ZNF836Q6ZNA1 936 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 OLIG3Q7RTU3 272 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 VRK2Q86Y07 508 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 HIPK1Q86Z02 1210 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 WDR31Q8NA23 367 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 PIK3C3Q8NEB9 887 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 OR10H5Q8NGA6 315 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 OR52E4Q8NGH9 312 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 ZNF524Q96C55 264 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 ZNF837Q96EG3 531 aaPredicted RBP6.81□□□□□ -1.32
CD44-211ENST00000442151 TEX37Q96LM6 180 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 C7orf26Q96N11 449 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 ANKRD27Q96NW4 1050 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 SLC38A2Q96QD8 506 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 TNFRSF13CQ96RJ3 184 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 ASPNQ9BXN1 380 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 DENND2DQ9H6A0 471 aaPredicted RBP6.81□□□□□ -1.32
CD44-211ENST00000442151 TMEM160Q9NX00 188 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 ADPRHL2Q9NX46 363 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 TRIM33Q9UPN9 1127 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 DSPPQ9NZW4 1301 aa6.81□□□□□ -1.32
CD44-211ENST00000442151 TRAV36DV7A0A075B6V5 113 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 ARPC4-TTLL3A0A0A6YYG9 625 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 CLDN24A6NM45 220 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 ZNF726A6NNF4 738 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 MGRN1O60291 552 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 OR6A2O95222 327 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 C8BP07358 591 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 ITGA5P08648 1049 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 GKN3PP0CG01 181 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 HNF1AP20823 631 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 LSP1P33241 339 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 ARR3P36575 388 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 CDK6Q00534 326 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 RBBP4Q09028 425 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 SLC9B1Q4ZJI4 515 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 FAM69AQ5T7M9 428 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 C11orf71Q6IPW1 123 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 DHRS4L2Q6PKH6 230 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 EPGNQ6UW88 154 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 C6orf89Q6UWU4 347 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 DNM1P46Q6ZS02 220 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 H1FNTQ75WM6 255 aaPredicted RBP6.8□□□□□ -1.32
CD44-211ENST00000442151 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.8□□□□□ -1.32
CD44-211ENST00000442151 ATG4DQ86TL0 474 aaPredicted RBP6.8□□□□□ -1.32
CD44-211ENST00000442151 RANBP3LQ86VV4 465 aaPredicted RBP6.8□□□□□ -1.32
CD44-211ENST00000442151 LSMEM1Q8N8F7 131 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 ADPRHL1Q8NDY3 354 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 OR1K1Q8NGR3 316 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 RNF217Q8TC41 542 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 NEU4Q8WWR8 484 aaPredicted RBP6.8□□□□□ -1.32
CD44-211ENST00000442151 STON2Q8WXE9 905 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 TMEM158Q8WZ71 300 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 NEUROG1Q92886 237 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 TLCD1Q96CP7 247 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 SLC25A36Q96CQ1 311 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 LRR1Q96L50 414 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 PIMREGQ9BSJ6 248 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 TCF7L2Q9NQB0 619 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 NPAP1Q9NZP6 1156 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 USP22Q9UPT9 525 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 ANGPT4Q9Y264 503 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 PCDHB14Q9Y5E9 798 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 GMEB1Q9Y692 573 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 LOC390937A0A1W2PQ73 354 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 RPL36A-HNRNPH2H7BZ11 118 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 PAX4O43316 350 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 FRS3O43559 492 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 ADAM11O75078 769 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 CBR1P16152 277 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 CDH2P19022 906 aaPredicted RBP6.8□□□□□ -1.32
CD44-211ENST00000442151 PCMT1P22061 227 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 USF1P22415 310 aaPredicted RBP6.8□□□□□ -1.32
CD44-211ENST00000442151 THBS2P35442 1172 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 SERPINF1P36955 418 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 TBRG1Q3YBR2 411 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 C9orf135Q5VTT2 229 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 UEVLDQ8IX04 471 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 CLIP4Q8N3C7 705 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 SCAIQ8N9R8 606 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 TSPEARQ8WU66 669 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms