RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 RAP2AP10114 183 aa11.03□□□□□ -0.64
USP40-205ENST00000430158 CD8BP10966 210 aa11.03□□□□□ -0.64
USP40-205ENST00000430158 MAKP20794 623 aa11.03□□□□□ -0.64
USP40-205ENST00000430158 BMP5P22003 454 aa11.03□□□□□ -0.64
USP40-205ENST00000430158 PRKCDQ05655 676 aa11.03□□□□□ -0.64
USP40-205ENST00000430158 MFSD13AQ14CX5 517 aa11.03□□□□□ -0.64
USP40-205ENST00000430158 POU4F3Q15319 338 aa11.03□□□□□ -0.64
USP40-205ENST00000430158 EEF1A1P5Q5VTE0 462 aa11.03□□□□□ -0.64
USP40-205ENST00000430158 GTF2IRD2BQ6EKJ0 949 aa11.03□□□□□ -0.64
USP40-205ENST00000430158 ZNF474Q6S9Z5 364 aaPredicted RBP11.03□□□□□ -0.64
USP40-205ENST00000430158 LIAT1Q6ZQX7 453 aa11.03□□□□□ -0.64
USP40-205ENST00000430158 MBOAT2Q6ZWT7 520 aa11.03□□□□□ -0.64
USP40-205ENST00000430158 H1FNTQ75WM6 255 aaPredicted RBP11.03□□□□□ -0.64
USP40-205ENST00000430158 GTF2IRD2Q86UP8 949 aa11.03□□□□□ -0.64
USP40-205ENST00000430158 CYP4Z1Q86W10 505 aa11.03□□□□□ -0.64
USP40-205ENST00000430158 EPHX4Q8IUS5 362 aa11.03□□□□□ -0.64
USP40-205ENST00000430158 NRMQ8IXM6 262 aa11.03□□□□□ -0.64
USP40-205ENST00000430158 RNF113BQ8IZP6 322 aaKnown RBP11.03□□□□□ -0.64
USP40-205ENST00000430158 ZNF417Q8TAU3 575 aa11.03□□□□□ -0.64
USP40-205ENST00000430158 PIGXQ8TBF5 258 aa11.03□□□□□ -0.64
USP40-205ENST00000430158 ZHX1-C8orf76Q96EF9 292 aa11.03□□□□□ -0.64
USP40-205ENST00000430158 LRGUKQ96M69 825 aa11.03□□□□□ -0.64
USP40-205ENST00000430158 ZNF587Q96SQ5 575 aaPredicted RBP11.03□□□□□ -0.64
USP40-205ENST00000430158 NAA11Q9BSU3 229 aaPredicted RBP11.03□□□□□ -0.64
USP40-205ENST00000430158 SF3B5Q9BWJ5 86 aaKnown RBP11.03□□□□□ -0.64
USP40-205ENST00000430158 CHID1Q9BWS9 393 aa11.03□□□□□ -0.64
USP40-205ENST00000430158 TAPBPLQ9BX59 468 aa11.03□□□□□ -0.64
USP40-205ENST00000430158 PRRG4Q9BZD6 226 aa11.03□□□□□ -0.64
USP40-205ENST00000430158 TRIM15Q9C019 465 aa11.03□□□□□ -0.64
USP40-205ENST00000430158 FKRPQ9H9S5 495 aa11.03□□□□□ -0.64
USP40-205ENST00000430158 CHST11Q9NPF2 352 aa11.03□□□□□ -0.64
USP40-205ENST00000430158 CCM2LQ9NUG4 571 aaPredicted RBP11.03□□□□□ -0.64
USP40-205ENST00000430158 TAS2R5Q9NYW4 299 aa11.03□□□□□ -0.64
USP40-205ENST00000430158 COQ3Q9NZJ6 369 aa11.03□□□□□ -0.64
USP40-205ENST00000430158 KLHL9Q9P2J3 617 aa11.03□□□□□ -0.64
USP40-205ENST00000430158 B3GALT5Q9Y2C3 310 aa11.03□□□□□ -0.64
USP40-205ENST00000430158 FAM32AQ9Y421 112 aaKnown RBP11.03□□□□□ -0.64
USP40-205ENST00000430158 CORINQ9Y5Q5 1042 aa11.03□□□□□ -0.64
USP40-205ENST00000430158 UNC79Q9P2D8 2635 aa11.03□□□□□ -0.64
USP40-205ENST00000430158 CRYBG3Q68DQ2 2970 aa11.02□□□□□ -0.64
USP40-205ENST00000430158 NBPF19A0A087WUL8 3843 aa11.02□□□□□ -0.65
USP40-205ENST00000430158 DHRS12A0PJE2 317 aa11.02□□□□□ -0.65
USP40-205ENST00000430158 SH3PXD2BA1X283 911 aa11.02□□□□□ -0.65
USP40-205ENST00000430158 NKX2-6A6NCS4 301 aa11.02□□□□□ -0.65
USP40-205ENST00000430158 ENO4A6NNW6 628 aa11.02□□□□□ -0.65
USP40-205ENST00000430158 A8MXE2 369 aa11.02□□□□□ -0.65
USP40-205ENST00000430158 C19orf84I3L1E1 186 aa11.02□□□□□ -0.65
USP40-205ENST00000430158 KPNA4O00629 521 aaPredicted RBP11.02□□□□□ -0.65
USP40-205ENST00000430158 DVL2O14641 736 aa11.02□□□□□ -0.65
USP40-205ENST00000430158 OR7A10O76100 309 aa11.02□□□□□ -0.65
USP40-205ENST00000430158 VAMP5O95183 116 aa11.02□□□□□ -0.65
USP40-205ENST00000430158 IGFBP2P18065 325 aa11.02□□□□□ -0.65
USP40-205ENST00000430158 GRNP28799 593 aaKnown RBP11.02□□□□□ -0.65
USP40-205ENST00000430158 RRM2P31350 389 aa11.02□□□□□ -0.65
USP40-205ENST00000430158 OMPP47874 163 aa11.02□□□□□ -0.65
USP40-205ENST00000430158 SIRPAP78324 504 aa11.02□□□□□ -0.65
USP40-205ENST00000430158 CHRNB3Q05901 458 aa11.02□□□□□ -0.65
USP40-205ENST00000430158 ZP4Q12836 540 aa11.02□□□□□ -0.65
USP40-205ENST00000430158 FAM98BQ52LJ0 330 aaKnown RBP11.02□□□□□ -0.65
USP40-205ENST00000430158 ZNF770Q6IQ21 691 aaPredicted RBP11.02□□□□□ -0.65
USP40-205ENST00000430158 WDFY1Q8IWB7 410 aa11.02□□□□□ -0.65
USP40-205ENST00000430158 KDM8Q8N371 416 aa11.02□□□□□ -0.65
USP40-205ENST00000430158 OR9K2Q8NGE7 335 aa11.02□□□□□ -0.65
USP40-205ENST00000430158 OR6K3Q8NGY3 331 aa11.02□□□□□ -0.65
USP40-205ENST00000430158 SGTBQ96EQ0 304 aa11.02□□□□□ -0.65
USP40-205ENST00000430158 ZNF347Q96SE7 839 aa11.02□□□□□ -0.65
USP40-205ENST00000430158 GPA33Q99795 319 aa11.02□□□□□ -0.65
USP40-205ENST00000430158 PIGMQ9H3S5 423 aa11.02□□□□□ -0.65
USP40-205ENST00000430158 ZNF229Q9UJW7 825 aa11.02□□□□□ -0.65
USP40-205ENST00000430158 RASD1Q9Y272 281 aa11.02□□□□□ -0.65
USP40-205ENST00000430158 MED31Q9Y3C7 131 aa11.02□□□□□ -0.65
USP40-205ENST00000430158 TESMINQ9Y4I5 508 aa11.02□□□□□ -0.65
USP40-205ENST00000430158 KLF2Q9Y5W3 355 aaPredicted RBP11.02□□□□□ -0.65
USP40-205ENST00000430158 LYVE1Q9Y5Y7 322 aa11.02□□□□□ -0.65
USP40-205ENST00000430158 SPG11Q96JI7 2443 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 ABCA12Q86UK0 2595 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 AKAP6Q13023 2319 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 FAM90A27PA6NNH2 459 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 CDC42EP2O14613 210 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 MSTNO14793 375 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 TRAF3IP2O43734 574 aaPredicted RBP11.01□□□□□ -0.65
USP40-205ENST00000430158 FKBP6O75344 327 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 PTP4A3O75365 173 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 ZNF432O94892 652 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 HLA-DOBP13765 273 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 ZNF26P17031 533 aaPredicted RBP11.01□□□□□ -0.65
USP40-205ENST00000430158 FUT1P19526 365 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 CBLP22681 906 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 UQCRC1P31930 480 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 IFNA8P32881 189 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 PCYT1AP49585 367 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 ERFP50548 548 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 RPS4XP62701 263 aaKnown RBP11.01□□□□□ -0.65
USP40-205ENST00000430158 FOXD4Q12950 439 aaPredicted RBP11.01□□□□□ -0.65
USP40-205ENST00000430158 OR2T5Q6IEZ7 315 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 PPP4R4Q6NUP7 873 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 TFAP2EQ6VUC0 442 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 TMPRSS11FQ6ZWK6 438 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 CREB3L2Q70SY1 520 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 MAMDC2Q7Z304 686 aaPredicted RBP11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms