RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 ARPC5O15511 151 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 SCGB1D1O95968 90 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 CRYABP02511 175 aaKnown RBP6.38□□□□□ -1.39
SCN1A-204ENST00000423058 OLIG2Q13516 323 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 TATDN3Q17R31 274 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 PIP5KL1Q5T9C9 394 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 TMEM236Q5W0B7 351 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 LCN10Q6JVE6 187 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 USP51Q70EK9 711 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 MEPCEQ7L2J0 689 aaKnown RBP6.38□□□□□ -1.39
SCN1A-204ENST00000423058 FJX1Q86VR8 437 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 LRRC28Q86X40 367 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-204ENST00000423058 CPOQ8IVL8 374 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 TMEFF1Q8IYR6 380 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 MFSD9Q8NBP5 474 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 ZNF582Q96NG8 517 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-204ENST00000423058 DPH2Q9BQC3 489 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-204ENST00000423058 PECRQ9BY49 303 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 NECAP2Q9NVZ3 263 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 NCBP2LA6PVI3 153 aaKnown RBP6.38□□□□□ -1.39
SCN1A-204ENST00000423058 CTRB1P17538 263 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 RACK1P63244 317 aaKnown RBP6.38□□□□□ -1.39
SCN1A-204ENST00000423058 ZNF266Q14584 549 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 CTRB2Q6GPI1 263 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 LIN28BQ6ZN17 250 aaKnown RBP eCLIP6.38□□□□□ -1.392e-6■■□□□ 12
SCN1A-204ENST00000423058 FRMD1Q8N878 549 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 ARRDC3Q96B67 414 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 SLC35A4Q96G79 324 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 PEBP4Q96S96 227 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 CHST11Q9NPF2 352 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 INTS6Q9UL03 887 aaKnown RBP6.38□□□□□ -1.39
SCN1A-204ENST00000423058 STYXL1Q9Y6J8 313 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 DOCK2Q92608 1830 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 SCN8AQ9UQD0 1980 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 A8MV72 311 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-204ENST00000423058 E7ESA3 106 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 MT-ND4P03905 459 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 MAOBP27338 520 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 STT3AP46977 705 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 LTBQ06643 244 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 VEZF1Q14119 521 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 ENTPD8Q5MY95 495 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 COMMD7Q86VX2 200 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 CHST14Q8NCH0 376 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 GPR150Q8NGU9 434 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 SECTM1Q8WVN6 248 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 OR7D2Q96RA2 312 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 NMES1Q9C002 83 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 PLEKHF2Q9H8W4 249 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 POLDIP2Q9Y2S7 368 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 SH2D1BO14796 132 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 SLC16A6O15403 523 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 GOSR1O95249 250 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 SNAP29O95721 258 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 PTTG1O95997 202 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 FECHP22830 423 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 RGRP47804 291 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 MRPL19P49406 292 aaKnown RBP6.38□□□□□ -1.39
SCN1A-204ENST00000423058 CXADRP78310 365 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 TPBGQ13641 420 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 OR4D1Q15615 310 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 TP53I3Q53FA7 332 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 ZNF626Q68DY1 528 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 C19orf35Q6ZS72 473 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 RPS27LQ71UM5 84 aaKnown RBP6.38□□□□□ -1.39
SCN1A-204ENST00000423058 ZNF551Q7Z340 670 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-204ENST00000423058 ADGRG5Q8IZF4 528 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 DTX3Q8N9I9 347 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 DOK4Q8TEW6 326 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 NSUN5Q96P11 429 aaKnown RBP6.38□□□□□ -1.39
SCN1A-204ENST00000423058 PDCD1LG2Q9BQ51 273 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 ZNF436Q9C0F3 470 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-204ENST00000423058 SLA2Q9H6Q3 261 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 BARX1Q9HBU1 254 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-204ENST00000423058 ACKR4Q9NPB9 350 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 SIX2Q9NPC8 291 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 SMOXQ9NWM0 555 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 KLF13Q9Y2Y9 288 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-204ENST00000423058 CORINQ9Y5Q5 1042 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 ZNF705GA8MUZ8 300 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-204ENST00000423058 M0QZQ0 153 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 PXNP49023 591 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-204ENST00000423058 RAP2BP61225 183 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 TNFRSF17Q02223 184 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 PSAPL1Q6NUJ1 521 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 FAM122CQ6P4D5 195 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 LINC00299Q6ZSB3 139 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 NKAIN3Q8N8D7 197 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 ZFP41Q8N8Y5 198 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 EXD3Q8N9H8 876 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 OR51L1Q8NGJ5 315 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 ARV1Q9H2C2 271 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 CDCP1Q9H5V8 836 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 C12orf49Q9H741 205 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 HEYLQ9NQ87 328 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-204ENST00000423058 PUS1Q9Y606 427 aaKnown RBP eCLIP6.38□□□□□ -1.39
SCN1A-204ENST00000423058 FADS1O60427 444 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 GRPP07492 148 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 SLURP2P0DP57 97 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 PRLHRP49683 370 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms